PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g109800.4
Common NameMTR_3g109800
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HD-ZIP
Protein Properties Length: 789aa    MW: 86390.8 Da    PI: 6.3323
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g109800.4genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-182078357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     k  ++t+eq+e+Le+l++++++p+  +r++L +++    +++ +q+kvWFqNrR +ek+
  Medtr3g109800.4 20 KYVRYTPEQVEALERLYHECPKPTSLRRQQLIRECpilsHIEPKQIKVWFQNRRCREKQ 78
                     5679*****************************************************97 PP
2START175.92.5e-551603682205
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 
                      +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  ++a  v+e+l+d++ W ++++ +++l+v s+g  g+++l
  Medtr3g109800.4 160 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGSPGVAARACGLVGLEPA-RVAEILKDRLSWYRDCRTVDVLNVMSTGngGTIEL 252
                      7899******************************************************.9999999999************************* PP

                      EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS
            START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183
                       +++l+a+++l+p Rdf+ +Ry+  l++g++v++++S++++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+ l+ ++++++lr+
  Medtr3g109800.4 253 LYMQLYAPTTLAPgRDFWLLRYTSLLEDGSLVVCERSLNNTQNGPSmppVPHFVRAEVLPSGYLIRPCEGGGSIIHIVDHMLLEPWSVPEVLRP 346
                      ********************************************999999******************************************** PP

                      HHHHHHHHHHHHHHHHTXXXXX CS
            START 184 lvksglaegaktwvatlqrqce 205
                      l++s++  +++t++a+l+++++
  Medtr3g109800.4 347 LYESSMLLAQRTTMAALRHLRQ 368
                      *****************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.5161579IPR001356Homeobox domain
SMARTSM003891.8E-151783IPR001356Homeobox domain
SuperFamilySSF466895.56E-171982IPR009057Homeodomain-like
CDDcd000864.10E-162080No hitNo description
PfamPF000463.4E-162178IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.9E-182278IPR009057Homeodomain-like
CDDcd146864.40E-672111No hitNo description
PROSITE profilePS5084824.481150378IPR002913START domain
CDDcd088751.66E-76154369No hitNo description
SuperFamilySSF559612.61E-36159370No hitNo description
SMARTSM002342.4E-41159369IPR002913START domain
Gene3DG3DSA:3.30.530.208.7E-21159365IPR023393START-like domain
PfamPF018521.4E-52160368IPR002913START domain
PfamPF086701.3E-28694787IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010067Biological Processprocambium histogenesis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0010089Biological Processxylem development
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 789 aa     Download sequence    Send to blast
MMAVSSGCKD GSKIAMDNGK YVRYTPEQVE ALERLYHECP KPTSLRRQQL IRECPILSHI  60
EPKQIKVWFQ NRRCREKQRK EAGRLQAVNR KLTAMNKLLM EENDRLQKQV SHLVYENTFF  120
RQHTQNTTLA TTDTSCESVV TSGQQHPQPR DASPAGLLSI AEETLAEFLS KATGTAVEWV  180
QMPGMKPGPD SIGIVAISHG SPGVAARACG LVGLEPARVA EILKDRLSWY RDCRTVDVLN  240
VMSTGNGGTI ELLYMQLYAP TTLAPGRDFW LLRYTSLLED GSLVVCERSL NNTQNGPSMP  300
PVPHFVRAEV LPSGYLIRPC EGGGSIIHIV DHMLLEPWSV PEVLRPLYES SMLLAQRTTM  360
AALRHLRQIS QEVSQPSVTG WGRRPAALRA LSQRLSKGFN EAVNGFTDDG WSMLDSDGID  420
DVTLLVNSSP SKMMGLNLGY NNGFPSVTSS VLCAKASMLL QNVPPAILLR FLREHRSEWA  480
DTSIDAYSAA AIKAGPCSLP GARTGAFGGQ VILPLAHTIE HEEFMEVIKL ENMGYYRDDM  540
TMPGDIFLLQ LCSGVDEHAV GTSAELIFAP IDASFSDDAP ILPSGFRIIP LESGTDAASP  600
NRTLDLASAL EVGTTGNKAG GDNSGHSGIT KSVMTIAFQF AFEAHLQDNI AAMARQYVRS  660
IVASVQRVSL ALSPSRFGSQ NAFPLPPGTP EAQTLTRWIC NSYRFYLGAE LLKCEGSESI  720
LKSLWHHSDA VLCCSLKALP VFTFANQAGL DMLETTLVAL QDITLEKIFD DNGKKTLCSE  780
FPQIMQQV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.244350.0root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the procambial cells and the developing vascular system of embryos, roots and shoots. Expressed during the early stages of revascularization after cutting experiment. {ECO:0000269|PubMed:12447534, ECO:0000269|PubMed:8575317}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g109800.4
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ2912510.0JQ291251.1 Pisum sativum HB8 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003603630.20.0homeobox-leucine zipper protein ATHB-8
SwissprotQ391230.0ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBLA0A072VD230.0A0A072VD23_MEDTR; Class III homeodomain leucine zipper protein
STRINGAES738810.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0homeobox gene 8
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
    Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
    Planta, 2014. 239(5): p. 989-1001
    [PMID:24488524]
  4. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  5. Kakehi J, et al.
    Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
    PLoS ONE, 2015. 10(1): p. e0117309
    [PMID:25625317]
  6. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  7. Liu S, et al.
    Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 388
    [PMID:26082787]
  8. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]
  9. Yamazaki K, et al.
    Suppression of DELLA signaling induces procambial cell formation in culture.
    Plant J., 2018. 94(1): p. 48-59
    [PMID:29383774]