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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g106230.1 | ||||||||
Common Name | MTR_3g106230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | C2H2 | ||||||||
Protein Properties | Length: 229aa MW: 25573.5 Da PI: 8.1529 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.3 | 0.00025 | 74 | 96 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H Medtr3g106230.1 74 FTCNYCKRKFFSSQALGGHQNAH 96 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.37E-6 | 71 | 101 | No hit | No description |
PROSITE profile | PS50157 | 11.323 | 74 | 101 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 76 | 96 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MEMPLQNPHE TFEEEEKEAK VDTSFDLNVP NNDCDLGCNS MSNLVTCLDI DNSSKTSSEN 60 FTCGSESTSE PRFFTCNYCK RKFFSSQALG GHQNAHKRER SIAKRGRRTM FSATGTTSFL 120 HNHLHHRYAN MASLLPLYGA NSNSMRPLSI KVHSIVQKPI HNFSSNGFGT ESTYYGYHGW 180 SRPLMNQQPG RGKLLMQTLQ ETGLLSQSSV GRFEEVKKDM VNSGTGLN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g106230.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU019601 | 0.0 | CU019601.8 M.truncatula DNA sequence from clone MTH2-12A22 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003603313.1 | 1e-172 | zinc finger protein 1 | ||||
TrEMBL | G7J9W4 | 1e-171 | G7J9W4_MEDTR; Putative transcription factor C2H2 family | ||||
STRING | AES73564 | 1e-171 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1439 | 31 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25160.1 | 1e-28 | zinc finger protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g106230.1 |
Entrez Gene | 11429951 |
Publications ? help Back to Top | |||
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