PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g102590.1
Common NameMTR_061s1022, MTR_133s1023, MTR_3g102590
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARR-B
Protein Properties Length: 241aa    MW: 27055.6 Da    PI: 5.2058
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g102590.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like73.92.3e-23145196355
          G2-like   3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      + +W+ eLH++Fv av+qL G++kA+P +il lm+v+ +t+e+v+SHL kYRl
  Medtr3g102590.1 145 QSVWSVELHHKFVAAVNQL-GIDKAVPEKILGLMNVENITREDVASHLRKYRL 196
                      678****************.********************************8 PP
2Response_reg66.99.5e-23141231109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl vd + + ++ l++ l++ +y +v+++++++ al++l+e++  +Dl++ D+ +p+mdGl+ll+  + e + + +++++ ++++e++ +a+  
  Medtr3g102590.1  14 VLAVDGDSTHLSDLETRLRSCQY-HVTTTSQAKTALTMLRENKdkFDLVIADVHLPDMDGLKLLELVELETDLPVVVMLSESSDNELVMKAVFH 106
                      788999999**************.***************888888********************9988887777788889999********** PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga+dfl+Kp+  +el +
  Medtr3g102590.1 107 GASDFLVKPVRLQELKT 123
                      *************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.5E-3311146No hitNo description
SuperFamilySSF521721.1E-2811143IPR011006CheY-like superfamily
SMARTSM004483.2E-2212125IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011033.28713129IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.7E-2014124IPR001789Signal transduction response regulator, receiver domain
CDDcd001569.75E-1815129No hitNo description
SuperFamilySSF466892.33E-14141196IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-19143197IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.2E-22147196IPR009057Homeodomain-like
PfamPF002496.8E-6147195IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MDDSSDRFPI GMRVLAVDGD STHLSDLETR LRSCQYHVTT TSQAKTALTM LRENKDKFDL  60
VIADVHLPDM DGLKLLELVE LETDLPVVVM LSESSDNELV MKAVFHGASD FLVKPVRLQE  120
LKTIWQHVIR KKKDNEDLSA QKKSQSVWSV ELHHKFVAAV NQLGIDKAVP EKILGLMNVE  180
NITREDVASH LRKYRLIDYV KKVSSVANQH ASSLVAASRS ADQDEDKDED KENGHDNEDP  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-19139204164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g102590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6474148e-43JQ647414.1 Medicago truncatula cultivar Jemalong A17 response regulator 1 (RR1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013461736.21e-150uncharacterized protein LOC25489924
SwissprotA2X1N24e-85ORR24_ORYSI; Two-component response regulator ORR24
SwissprotQ6H8055e-85ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLG8A2C31e-174G8A2C3_MEDTR; Two-component response regulator
STRINGAES839621e-175(Medicago truncatula)
STRINGAES856111e-175(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1847535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.12e-85response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]