PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g101520.4 | ||||||||
Common Name | MTR_3g101520 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | B3 | ||||||||
Protein Properties | Length: 232aa MW: 26245.1 Da PI: 10.044 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.1 | 1.2e-16 | 134 | 223 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k +++s+v+ +l lp++f++++ +k ++ +tl de+g + ++ ++ + l++GW++F+ a++L +gD ++F+l++r+ f +v Medtr3g101520.4 134 FVKSMLQSHVTGGFWLGLPNHFCRKNL-PK-RDEVMTLIDEDGDESPTTY--LAHKTG--LSAGWRGFAIAHNLVDGDALIFELVKRTAF--KV 219 89*********************9994.33.5568***************..666655..9************************99999..88 PP EEE- CS B3 95 kvfr 98 ++r Medtr3g101520.4 220 YIIR 223 8877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.92E-24 | 127 | 225 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-20 | 127 | 224 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.32E-25 | 132 | 223 | No hit | No description |
PROSITE profile | PS50863 | 11.716 | 134 | 225 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.7E-23 | 134 | 225 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-14 | 134 | 223 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MVAKASSYEE SRRKRMEENQ KRMEALSLTK LSQSLHKSSS PISKPSPSKP RTPIKKELVV 60 VRRSGRVANM PAPVYKEILI DSVKIPRNRI SRCGGYDKYR DYSKRVYASD EARMEAMEKA 120 DKLLSDLDSD HPTFVKSMLQ SHVTGGFWLG LPNHFCRKNL PKRDEVMTLI DEDGDESPTT 180 YLAHKTGLSA GWRGFAIAHN LVDGDALIFE LVKRTAFKVY IIRVNEGKQD D* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g101520.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT142056 | 0.0 | BT142056.1 Medicago truncatula clone JCVI-FLMt-7B11 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003603025.1 | 1e-172 | B3 domain-containing protein At3g19184 isoform X1 | ||||
Refseq | XP_024633828.1 | 1e-172 | B3 domain-containing protein At3g19184 isoform X1 | ||||
Swissprot | Q69V36 | 6e-75 | Y6944_ORYSJ; B3 domain-containing protein Os06g0194400 | ||||
TrEMBL | G7J6B9 | 1e-171 | G7J6B9_MEDTR; B3 domain transcription factor | ||||
STRING | AES73276 | 1e-172 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 2e-59 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g101520.4 |
Entrez Gene | 11431814 |
Publications ? help Back to Top | |||
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