PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g098810.2
Common NameMTR_3g098810
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 175aa    MW: 19773.8 Da    PI: 9.6868
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g098810.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM150.86.4e-47141411128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGf F+Ptdeelv +yLk k+ + +l++ ++i+e++++k++PwdLp ++  +e++ yfFs+++ ky++++r nr+t+sgyWkatg+dk+v +
  Medtr3g098810.2  14 LPPGFCFQPTDEELVFHYLKCKIFSYQLPA-SIIPEINVCKFDPWDLPGNC--GEQDKYFFSSKEAKYRNSNRMNRTTSSGYWKATGSDKKVSV 104
                      79****************************.89***************544..77899**********************************99 PP

              NAM  95 k...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +   ++   g++k+Lvfy+g++p+g++t+W+mheyrl
  Medtr3g098810.2 105 SsslSNGIAGIRKSLVFYQGKSPNGSRTHWIMHEYRL 141
                      86776667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.67E-5010147IPR003441NAC domain
PROSITE profilePS5100547.48614165IPR003441NAC domain
PfamPF023651.4E-2415141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MEKLNFVKNG VSKLPPGFCF QPTDEELVFH YLKCKIFSYQ LPASIIPEIN VCKFDPWDLP  60
GNCGEQDKYF FSSKEAKYRN SNRMNRTTSS GYWKATGSDK KVSVSSSLSN GIAGIRKSLV  120
FYQGKSPNGS RTHWIMHEYR LVSLGTTACN QVINIPLIIY VVFFTTKVTM TKLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-431414115140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269|PubMed:20388856}.
UniprotTISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g098810.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1467470.0AC146747.7 Medicago truncatula clone mth2-14h5, complete sequence.
GenBankCU0626590.0CU062659.10 M.truncatula DNA sequence from clone MTH2-14C23 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003602768.11e-112NAC domain-containing protein 83
SwissprotQ9FY932e-61NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A072V1I41e-127A0A072V1I4_MEDTR; NAC transcription factor-like protein
STRINGAES730191e-111(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.13e-59NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]