PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g098790.1 | ||||||||
Common Name | MTR_3g098790 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | B3 | ||||||||
Protein Properties | Length: 329aa MW: 37995.1 Da PI: 10.5278 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.7 | 2.5e-19 | 13 | 105 | 1 | 100 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ffk+ ++ +l +g l++p+kf+e++g+ +kt+ +++++g W+++l k++g+++++kGWkeF++ + L g ++Fk++++s f +v Medtr3g098790.1 13 FFKIILT-QNLHHGKLMMPRKFVEKYGEC--LPKTICVKTPNGVNWKLNL--VKSDGKIWFQKGWKEFAEYHSLAHGHLLLFKYERTSLF--HV 99 5666544.5666778***********955..999****************..********************************998888..** PP EEE-SS CS B3 95 kvfrks 100 ++f+ks Medtr3g098790.1 100 HIFDKS 105 ***985 PP | |||||||
2 | B3 | 61.1 | 1.8e-19 | 200 | 300 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+ v+ s+v + +l++p f ++h +++k+++ ++ ++ ++gr+W k+++r + + + l++GWk F+k+n+Lk+gD + F+l+ +++ + Medtr3g098790.1 200 FVVVMGASYVEHHFLLTIPSMFGKRHfDLNKKRG-DIHFQLSNGRVWPAKYRIRMSHTGlrFELSSGWKTFAKDNNLKVGDACNFELILSTNMT 292 6778889*******************97777666.9***************88666666669999*********************99666666 PP .EEEEE-S CS B3 92 lvvkvfrk 99 + v++fr+ Medtr3g098790.1 293 FQVHIFRE 300 6****996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.9E-25 | 8 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.08E-25 | 10 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.76E-18 | 12 | 103 | No hit | No description |
PROSITE profile | PS50863 | 14.071 | 12 | 105 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.0E-16 | 13 | 104 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.7E-20 | 13 | 105 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.3E-23 | 188 | 309 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.31E-22 | 196 | 301 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.18E-22 | 198 | 299 | No hit | No description |
PROSITE profile | PS50863 | 14.579 | 200 | 301 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.2E-19 | 200 | 300 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.3E-15 | 200 | 301 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MANKIPRAKP VHFFKIILTQ NLHHGKLMMP RKFVEKYGEC LPKTICVKTP NGVNWKLNLV 60 KSDGKIWFQK GWKEFAEYHS LAHGHLLLFK YERTSLFHVH IFDKSALEIN YPLTRVEDKR 120 VFNCQGKKPS NNEDCRASQK RKTNSSFEIG SSSCVNVRKF QKAAVHHIDR KGKGKPVIVD 180 ADKVTTLERA KSFKTCNPSF VVVMGASYVE HHFLLTIPSM FGKRHFDLNK KRGDIHFQLS 240 NGRVWPAKYR IRMSHTGLRF ELSSGWKTFA KDNNLKVGDA CNFELILSTN MTFQVHIFRE 300 TDKDNTNCST SQSRINWCLI FFPIPFLI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g098790.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC146747 | 0.0 | AC146747.7 Medicago truncatula clone mth2-14h5, complete sequence. | |||
GenBank | CU062659 | 0.0 | CU062659.10 M.truncatula DNA sequence from clone MTH2-14C23 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024634792.1 | 0.0 | B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | G7J3B6 | 0.0 | G7J3B6_MEDTR; Plant-specific B3-DNA-binding domain protein | ||||
STRING | AES73017 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 9e-37 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g098790.1 |
Entrez Gene | 11434552 |
Publications ? help Back to Top | |||
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