PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g098790.1
Common NameMTR_3g098790
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 329aa    MW: 37995.1 Da    PI: 10.5278
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g098790.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.72.5e-19131051100
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ffk+ ++  +l +g l++p+kf+e++g+    +kt+ +++++g  W+++l   k++g+++++kGWkeF++ + L  g  ++Fk++++s f  +v
  Medtr3g098790.1  13 FFKIILT-QNLHHGKLMMPRKFVEKYGEC--LPKTICVKTPNGVNWKLNL--VKSDGKIWFQKGWKEFAEYHSLAHGHLLLFKYERTSLF--HV 99 
                      5666544.5666778***********955..999****************..********************************998888..** PP

                      EEE-SS CS
               B3  95 kvfrks 100
                      ++f+ks
  Medtr3g098790.1 100 HIFDKS 105
                      ***985 PP
2B361.11.8e-19200300199
                      EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                      f+ v+  s+v  + +l++p  f ++h +++k+++ ++ ++ ++gr+W  k+++r +  +  + l++GWk F+k+n+Lk+gD + F+l+ +++ +
  Medtr3g098790.1 200 FVVVMGASYVEHHFLLTIPSMFGKRHfDLNKKRG-DIHFQLSNGRVWPAKYRIRMSHTGlrFELSSGWKTFAKDNNLKVGDACNFELILSTNMT 292
                      6778889*******************97777666.9***************88666666669999*********************99666666 PP

                      .EEEEE-S CS
               B3  92 lvvkvfrk 99 
                      + v++fr+
  Medtr3g098790.1 293 FQVHIFRE 300
                      6****996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.9E-258105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-2510112IPR015300DNA-binding pseudobarrel domain
CDDcd100175.76E-1812103No hitNo description
PROSITE profilePS5086314.07112105IPR003340B3 DNA binding domain
PfamPF023623.0E-1613104IPR003340B3 DNA binding domain
SMARTSM010196.7E-2013105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-23188309IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-22196301IPR015300DNA-binding pseudobarrel domain
CDDcd100171.18E-22198299No hitNo description
PROSITE profilePS5086314.579200301IPR003340B3 DNA binding domain
PfamPF023625.2E-19200300IPR003340B3 DNA binding domain
SMARTSM010199.3E-15200301IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MANKIPRAKP VHFFKIILTQ NLHHGKLMMP RKFVEKYGEC LPKTICVKTP NGVNWKLNLV  60
KSDGKIWFQK GWKEFAEYHS LAHGHLLLFK YERTSLFHVH IFDKSALEIN YPLTRVEDKR  120
VFNCQGKKPS NNEDCRASQK RKTNSSFEIG SSSCVNVRKF QKAAVHHIDR KGKGKPVIVD  180
ADKVTTLERA KSFKTCNPSF VVVMGASYVE HHFLLTIPSM FGKRHFDLNK KRGDIHFQLS  240
NGRVWPAKYR IRMSHTGLRF ELSSGWKTFA KDNNLKVGDA CNFELILSTN MTFQVHIFRE  300
TDKDNTNCST SQSRINWCLI FFPIPFLI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g098790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1467470.0AC146747.7 Medicago truncatula clone mth2-14h5, complete sequence.
GenBankCU0626590.0CU062659.10 M.truncatula DNA sequence from clone MTH2-14C23 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024634792.10.0B3 domain-containing transcription factor VRN1
TrEMBLG7J3B60.0G7J3B6_MEDTR; Plant-specific B3-DNA-binding domain protein
STRINGAES730170.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-37B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]