PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr3g096920.2

Common Name

MTR_3g096920

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

NAC

Protein Properties

Length: 330aa MW: 38002.1 Da PI: 6.4203

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr3g096920.2	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.8	8.6e-53	7	131	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeelv++yL++k++g+++++ v+kevd+yk++Pw+Lp++ +++ekewyfFs+rd+ky++g+r+nra+ sgyWkatg dk++ + Medtr3g096920.2 7 LPPGFRFHPTDEELVNHYLCRKCAGQSISV-PVVKEVDLYKFDPWQLPEMGYHSEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGK 99 79**************************.89***********77778899********************************88 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +g+kk Lvfy g+apkg+kt+W+mheyrl Medtr3g096920.2 100 --LKPMGIKKALVFYAGKAPKGVKTNWIMHEYRL 131 ..889*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.37E-58	3	141	IPR003441	NAC domain
PROSITE profile	PS51005	57.136	7	194	IPR003441	NAC domain
Pfam	PF02365	6.2E-28	8	131	IPR003441	NAC domain
SuperFamily	SSF101941	8.37E-58	182	194	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MQGELELPPG FRFHPTDEEL VNHYLCRKCA GQSISVPVVK EVDLYKFDPW QLPEMGYHSE 60 KEWYFFSPRD RKYPNGSRPN RAAGSGYWKA TGADKPIGKL KPMGIKKALV FYAGKAPKGV 120 KTNWIMHEYR LANVDRSAGK KNNLRVCFVS ATTFFSYLNI RFIHLMMYVC GLSDCGLLCN 180 LQLDDWVLCR IYNKKGKIEK FNTSNTPKVQ NYYEHEEVEE HEMKPEIQKL GNYQLYMDTS 240 DSVPKLHTDS SSSGGHVVSP DVTCDREVQS EPKWNDLGIQ LDDAFDFQLN YLENALSFDI 300 DDDPFGTNQY QMNQLSPLQD MFMYPQKPF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-75	2	200	10	174	Stress-induced transcription factor NAC1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mtr.10860	0.0	flower\| leaf\| pod\| root\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr3g096920.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC141112	0.0	AC141112.7 Medicago truncatula clone mth2-15m12, complete sequence.
GenBank	CT009488	0.0	CT009488.4 M.truncatula DNA sequence from clone MTH2-70J8 on chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003602683.1	0.0	NAC domain-containing protein 2
Swissprot	Q39013	1e-116	NAC2_ARATH; NAC domain-containing protein 2
TrEMBL	G7JC85	0.0	G7JC85_MEDTR; NAC-like transcription factor
STRING	AES72935	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1258	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	1e-116	NAC family protein

Link Out ? help Back to Top
Phytozome	Medtr3g096920.2
Entrez Gene	11424011

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Florentin A,Damri M,Grafi G Stress induces plant somatic cells to acquire some features of stem cells accompanied by selective chromatin reorganization. Dev. Dyn., 2013. 242(10): p. 1121-33 [PMID:23798027] Jensen MK, et al. ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana. FEBS Open Bio, 2013. 3: p. 321-7 [PMID:23951554] Wang YX Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress. Mol. Biol. Rep., 2013. 40(11): p. 6451-8 [PMID:24057250] Yang X, et al. Overexpression of a Miscanthus lutarioriparius NAC gene MlNAC5 confers enhanced drought and cold tolerance in Arabidopsis. Plant Cell Rep., 2015. 34(6): p. 943-58 [PMID:25666276] Du Q,Wang H The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation. Plant Signal Behav, 2015. 10(10): p. e1078955 [PMID:26340415] Takasaki H, et al. SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] Liu Y,Sun J,Wu Y Arabidopsis ATAF1 enhances the tolerance to salt stress and ABA in transgenic rice. J. Plant Res., 2016. 129(5): p. 955-962 [PMID:27216423] Ghandchi FP,Caetano-Anolles G,Clough SJ,Ort DR Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining. PLoS ONE, 2016. 11(9): p. e0162327 [PMID:27618630] Zhao J,Missihoun TD,Bartels D The ATAF1 transcription factor is a key regulator of aldehyde dehydrogenase 7B4 (ALDH7B4) gene expression in Arabidopsis thaliana. Planta, 2018. 248(4): p. 1017-1027 [PMID:30027414]