PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g096920.2 | ||||||||
Common Name | MTR_3g096920 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | NAC | ||||||||
Protein Properties | Length: 330aa MW: 38002.1 Da PI: 6.4203 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.8 | 8.6e-53 | 7 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeelv++yL++k++g+++++ v+kevd+yk++Pw+Lp++ +++ekewyfFs+rd+ky++g+r+nra+ sgyWkatg dk++ + Medtr3g096920.2 7 LPPGFRFHPTDEELVNHYLCRKCAGQSISV-PVVKEVDLYKFDPWQLPEMGYHSEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGK 99 79****************************.89***************77778899************************************88 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +g+kk Lvfy g+apkg+kt+W+mheyrl Medtr3g096920.2 100 --LKPMGIKKALVFYAGKAPKGVKTNWIMHEYRL 131 ..889***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.37E-58 | 3 | 141 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.136 | 7 | 194 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.2E-28 | 8 | 131 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 8.37E-58 | 182 | 194 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MQGELELPPG FRFHPTDEEL VNHYLCRKCA GQSISVPVVK EVDLYKFDPW QLPEMGYHSE 60 KEWYFFSPRD RKYPNGSRPN RAAGSGYWKA TGADKPIGKL KPMGIKKALV FYAGKAPKGV 120 KTNWIMHEYR LANVDRSAGK KNNLRVCFVS ATTFFSYLNI RFIHLMMYVC GLSDCGLLCN 180 LQLDDWVLCR IYNKKGKIEK FNTSNTPKVQ NYYEHEEVEE HEMKPEIQKL GNYQLYMDTS 240 DSVPKLHTDS SSSGGHVVSP DVTCDREVQS EPKWNDLGIQ LDDAFDFQLN YLENALSFDI 300 DDDPFGTNQY QMNQLSPLQD MFMYPQKPF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-75 | 2 | 200 | 10 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.10860 | 0.0 | flower| leaf| pod| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g096920.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC141112 | 0.0 | AC141112.7 Medicago truncatula clone mth2-15m12, complete sequence. | |||
GenBank | CT009488 | 0.0 | CT009488.4 M.truncatula DNA sequence from clone MTH2-70J8 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003602683.1 | 0.0 | NAC domain-containing protein 2 | ||||
Swissprot | Q39013 | 1e-116 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | G7JC85 | 0.0 | G7JC85_MEDTR; NAC-like transcription factor | ||||
STRING | AES72935 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1258 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-116 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g096920.2 |
Entrez Gene | 11424011 |