PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g096140.2
Common NameMTR_3g096140
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 337aa    MW: 37484.7 Da    PI: 4.5621
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g096140.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM123.81.5e-38211417129
              NAM  17 eyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvf 108
                      ++Lk+k+ g+k+++ +vi+e+diyk+ PwdLp k  +k+++ +wyfF++  kky tg r nrat+ gyWk+tgkd+++ + ++++vg+ +tLvf
  Medtr3g096140.2   2 YFLKRKILGRKFPF-NVIDELDIYKYAPWDLPeKsLLKSGDLQWYFFTPVGKKYCTGGRMNRATEVGYWKTTGKDRSIEH-RNQVVGMIRTLVF 93 
                      89************.99**************95346677888*************************************9.999********** PP

              NAM 109 ykgrapkgektdWvmheyrle 129
                      ++g+apkg +tdWvmheyrle
  Medtr3g096140.2  94 HTGKAPKGDRTDWVMHEYRLE 114
                      *******************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100545.3611136IPR003441NAC domain
SuperFamilySSF1019412.88E-471136IPR003441NAC domain
PfamPF023659.4E-162113IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MYFLKRKILG RKFPFNVIDE LDIYKYAPWD LPEKSLLKSG DLQWYFFTPV GKKYCTGGRM  60
NRATEVGYWK TTGKDRSIEH RNQVVGMIRT LVFHTGKAPK GDRTDWVMHE YRLENKDLAD  120
NGVPQNSYVI CRVFQKEGPG PRNGAQYGKP FNEKDWDSEE EIDYVQAVPV AAVSAPALIL  180
PSSSHISEEN DMHTSARGCT GQTSLSGLSR LMPSGTTHPS APGNQADDDI LSMLAIFDDE  240
NALAGNENNG SEKVDNPGQA NNAEDVPYLI PNEIFEDLGD LNSLVGLDEG GGFSYGQKDE  300
YERLSTGNVS LFCNPPDFFE LLDLEVPLSW QTKHDG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-36213731169Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.164590.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g096140.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU0120500.0CU012050.16 M.truncatula DNA sequence from clone MTH2-31E18 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003602603.10.0NAC domain-containing protein 82 isoform X1
RefseqXP_013461557.10.0NAC domain-containing protein 82 isoform X3
TrEMBLA0A072V1770.0A0A072V177_MEDTR; NAC domain class transcription factor
TrEMBLG7JBJ40.0G7JBJ4_MEDTR; NAC domain class transcription factor
STRINGAES728540.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.41e-75NAC domain containing protein 82
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]