PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g096140.2 | ||||||||
Common Name | MTR_3g096140 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | NAC | ||||||||
Protein Properties | Length: 337aa MW: 37484.7 Da PI: 4.5621 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 123.8 | 1.5e-38 | 2 | 114 | 17 | 129 |
NAM 17 eyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvf 108 ++Lk+k+ g+k+++ +vi+e+diyk+ PwdLp k +k+++ +wyfF++ kky tg r nrat+ gyWk+tgkd+++ + ++++vg+ +tLvf Medtr3g096140.2 2 YFLKRKILGRKFPF-NVIDELDIYKYAPWDLPeKsLLKSGDLQWYFFTPVGKKYCTGGRMNRATEVGYWKTTGKDRSIEH-RNQVVGMIRTLVF 93 89************.99**************95346677888*************************************9.999********** PP NAM 109 ykgrapkgektdWvmheyrle 129 ++g+apkg +tdWvmheyrle Medtr3g096140.2 94 HTGKAPKGDRTDWVMHEYRLE 114 *******************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 45.361 | 1 | 136 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.88E-47 | 1 | 136 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.4E-16 | 2 | 113 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MYFLKRKILG RKFPFNVIDE LDIYKYAPWD LPEKSLLKSG DLQWYFFTPV GKKYCTGGRM 60 NRATEVGYWK TTGKDRSIEH RNQVVGMIRT LVFHTGKAPK GDRTDWVMHE YRLENKDLAD 120 NGVPQNSYVI CRVFQKEGPG PRNGAQYGKP FNEKDWDSEE EIDYVQAVPV AAVSAPALIL 180 PSSSHISEEN DMHTSARGCT GQTSLSGLSR LMPSGTTHPS APGNQADDDI LSMLAIFDDE 240 NALAGNENNG SEKVDNPGQA NNAEDVPYLI PNEIFEDLGD LNSLVGLDEG GGFSYGQKDE 300 YERLSTGNVS LFCNPPDFFE LLDLEVPLSW QTKHDG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-36 | 2 | 137 | 31 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.16459 | 0.0 | leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g096140.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU012050 | 0.0 | CU012050.16 M.truncatula DNA sequence from clone MTH2-31E18 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003602603.1 | 0.0 | NAC domain-containing protein 82 isoform X1 | ||||
Refseq | XP_013461557.1 | 0.0 | NAC domain-containing protein 82 isoform X3 | ||||
TrEMBL | A0A072V177 | 0.0 | A0A072V177_MEDTR; NAC domain class transcription factor | ||||
TrEMBL | G7JBJ4 | 0.0 | G7JBJ4_MEDTR; NAC domain class transcription factor | ||||
STRING | AES72854 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09330.4 | 1e-75 | NAC domain containing protein 82 |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g096140.2 |
Entrez Gene | 11423052 |
Publications ? help Back to Top | |||
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