PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g096140.1 | ||||||||
Common Name | MTR_3g096140 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | NAC | ||||||||
Protein Properties | Length: 358aa MW: 39898.6 Da PI: 4.5948 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 156 | 1.7e-48 | 8 | 135 | 2 | 129 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 pGfrFhPtd elv+++Lk+k+ g+k+++ +vi+e+diyk+ PwdLp k +k+++ +wyfF++ kky tg r nrat+ gyWk+tgkd+++ Medtr3g096140.1 8 IPGFRFHPTDVELVMYFLKRKILGRKFPF-NVIDELDIYKYAPWDLPeKsLLKSGDLQWYFFTPVGKKYCTGGRMNRATEVGYWKTTGKDRSIE 100 79***************************.99**************95346677888************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129 + ++++vg+ +tLvf++g+apkg +tdWvmheyrle Medtr3g096140.1 101 H-RNQVVGMIRTLVFHTGKAPKGDRTDWVMHEYRLE 135 9.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.16E-57 | 7 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.201 | 7 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.3E-25 | 9 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MAETKLMIPG FRFHPTDVEL VMYFLKRKIL GRKFPFNVID ELDIYKYAPW DLPEKSLLKS 60 GDLQWYFFTP VGKKYCTGGR MNRATEVGYW KTTGKDRSIE HRNQVVGMIR TLVFHTGKAP 120 KGDRTDWVMH EYRLENKDLA DNGVPQNSYV ICRVFQKEGP GPRNGAQYGK PFNEKDWDSE 180 EEIDYVQAVP VAAVSAPALI LPSSSHISEE NDMHTSARGC TGQTSLSGLS RLMPSGTTHP 240 SAPGNQADDD ILSMLAIFDD ENALAGNENN GSEKVDNPGQ ANNAEDVPYL IPNEIFEDLG 300 DLNSLVGLDE GGGFSYGQKD EYERLSTGNV SLFCNPPDFF ELLDLEVPLS WQTKHDG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-46 | 2 | 158 | 9 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.16459 | 0.0 | leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g096140.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU012050 | 0.0 | CU012050.16 M.truncatula DNA sequence from clone MTH2-31E18 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003602603.1 | 0.0 | NAC domain-containing protein 82 isoform X1 | ||||
TrEMBL | G7JBJ4 | 0.0 | G7JBJ4_MEDTR; NAC domain class transcription factor | ||||
STRING | AES72854 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3302 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09330.4 | 1e-86 | NAC domain containing protein 82 |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g096140.1 |
Entrez Gene | 11423052 |
Publications ? help Back to Top | |||
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