PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g096140.1
Common NameMTR_3g096140
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 358aa    MW: 39898.6 Da    PI: 4.5948
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g096140.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1561.7e-4881352129
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       pGfrFhPtd elv+++Lk+k+ g+k+++ +vi+e+diyk+ PwdLp k  +k+++ +wyfF++  kky tg r nrat+ gyWk+tgkd+++ 
  Medtr3g096140.1   8 IPGFRFHPTDVELVMYFLKRKILGRKFPF-NVIDELDIYKYAPWDLPeKsLLKSGDLQWYFFTPVGKKYCTGGRMNRATEVGYWKTTGKDRSIE 100
                      79***************************.99**************95346677888************************************* PP

              NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129
                      + ++++vg+ +tLvf++g+apkg +tdWvmheyrle
  Medtr3g096140.1 101 H-RNQVVGMIRTLVFHTGKAPKGDRTDWVMHEYRLE 135
                      9.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.16E-577157IPR003441NAC domain
PROSITE profilePS5100554.2017157IPR003441NAC domain
PfamPF023655.3E-259134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MAETKLMIPG FRFHPTDVEL VMYFLKRKIL GRKFPFNVID ELDIYKYAPW DLPEKSLLKS  60
GDLQWYFFTP VGKKYCTGGR MNRATEVGYW KTTGKDRSIE HRNQVVGMIR TLVFHTGKAP  120
KGDRTDWVMH EYRLENKDLA DNGVPQNSYV ICRVFQKEGP GPRNGAQYGK PFNEKDWDSE  180
EEIDYVQAVP VAAVSAPALI LPSSSHISEE NDMHTSARGC TGQTSLSGLS RLMPSGTTHP  240
SAPGNQADDD ILSMLAIFDD ENALAGNENN GSEKVDNPGQ ANNAEDVPYL IPNEIFEDLG  300
DLNSLVGLDE GGGFSYGQKD EYERLSTGNV SLFCNPPDFF ELLDLEVPLS WQTKHDG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-4621589169Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.164590.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g096140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU0120500.0CU012050.16 M.truncatula DNA sequence from clone MTH2-31E18 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003602603.10.0NAC domain-containing protein 82 isoform X1
TrEMBLG7JBJ40.0G7JBJ4_MEDTR; NAC domain class transcription factor
STRINGAES728540.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33023465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.41e-86NAC domain containing protein 82
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]