PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g093050.1
Common NameMTR_3g093050
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 594aa    MW: 66627.5 Da    PI: 5.3923
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g093050.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1676.4e-52221481127
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lp GfrF+Ptdeel+++yL+ k++g+  e+  vi+e+d++k+ePwd+p  + v++++ ew+fF+++d+ky++g+r nrat++gyWkatgkd+++
  Medtr3g093050.1  22 LPLGFRFRPTDEELIDYYLRSKINGNGDEV-WVIREIDVCKWEPWDMPdlSVVRNKDPEWFFFCPQDRKYPNGHRLNRATNHGYWKATGKDRKI 114
                      699************************999.89**************96447777888************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyr 127
                      +s ++ l+g+kktLvfy+grapkg++t+Wvmheyr
  Medtr3g093050.1 115 KS-GTILIGMKKTLVFYSGRAPKGKRTNWVMHEYR 148
                      **.99*****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.23E-6114172IPR003441NAC domain
PROSITE profilePS5100555.67822172IPR003441NAC domain
PfamPF023651.0E-2723148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MGSLDCVPSV DDGMAVLSLN SLPLGFRFRP TDEELIDYYL RSKINGNGDE VWVIREIDVC  60
KWEPWDMPDL SVVRNKDPEW FFFCPQDRKY PNGHRLNRAT NHGYWKATGK DRKIKSGTIL  120
IGMKKTLVFY SGRAPKGKRT NWVMHEYRPT LKELDGTNPG QNPYVLCRLF KKNDESVEVS  180
NYGEVEQTTS APLAANYSPE EIQSDPAPIT VSTSQVTEED KQLAVIPDIS EETISNVITS  240
VDYHSDGYDA HDVQNQIAKL AAEDDQALNF DMYYNPKDGL LLDDRLFSPP LVHMPQEFHY  300
QANNESDGRC GLQYGTNEIN ISDFLNYDLN WDQIPCEVSV SHQPNFPMLN VKDSGSGSNS  360
DVEVANMTGM QAAYPHEAID RRIPFATTPS FSHTFDYSGD DQKSNVVLLQ NNFQTAFPSD  420
VNNTGEVYNA VNGYEQPRTC NTIMSSESGI VRRARPTRDE QFKTNPMQGT AQRRIRLSKI  480
EHVSCGMVKV KDESCTQEQH NSKPIIAVEK AAENHASDDE SAICTNHACK QRKVPKSIAN  540
ASKGLRNFLL LGRAPFRSKT SSNCALWSSV FVVSASVLVS LAAFTNIWGY LKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-442117514171Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.12770.0flower| leaf| pod| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g093050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1194150.0AC119415.13 Medicago truncatula clone mth2-27n2, complete sequence.
GenBankAC1267890.0AC126789.20 Medicago truncatula clone mth2-36n23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003602412.10.0NAC domain-containing protein 62
TrEMBLG7J9300.0G7J930_MEDTR; NAC transcription factor-like protein
STRINGAES726640.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.13e-93NAC transcription factor-like 9
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]