PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g093050.1 | ||||||||
Common Name | MTR_3g093050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | NAC | ||||||||
Protein Properties | Length: 594aa MW: 66627.5 Da PI: 5.3923 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167 | 6.4e-52 | 22 | 148 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lp GfrF+Ptdeel+++yL+ k++g+ e+ vi+e+d++k+ePwd+p + v++++ ew+fF+++d+ky++g+r nrat++gyWkatgkd+++ Medtr3g093050.1 22 LPLGFRFRPTDEELIDYYLRSKINGNGDEV-WVIREIDVCKWEPWDMPdlSVVRNKDPEWFFFCPQDRKYPNGHRLNRATNHGYWKATGKDRKI 114 699************************999.89**************96447777888************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyr 127 +s ++ l+g+kktLvfy+grapkg++t+Wvmheyr Medtr3g093050.1 115 KS-GTILIGMKKTLVFYSGRAPKGKRTNWVMHEYR 148 **.99*****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.23E-61 | 14 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.678 | 22 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-27 | 23 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 594 aa Download sequence Send to blast |
MGSLDCVPSV DDGMAVLSLN SLPLGFRFRP TDEELIDYYL RSKINGNGDE VWVIREIDVC 60 KWEPWDMPDL SVVRNKDPEW FFFCPQDRKY PNGHRLNRAT NHGYWKATGK DRKIKSGTIL 120 IGMKKTLVFY SGRAPKGKRT NWVMHEYRPT LKELDGTNPG QNPYVLCRLF KKNDESVEVS 180 NYGEVEQTTS APLAANYSPE EIQSDPAPIT VSTSQVTEED KQLAVIPDIS EETISNVITS 240 VDYHSDGYDA HDVQNQIAKL AAEDDQALNF DMYYNPKDGL LLDDRLFSPP LVHMPQEFHY 300 QANNESDGRC GLQYGTNEIN ISDFLNYDLN WDQIPCEVSV SHQPNFPMLN VKDSGSGSNS 360 DVEVANMTGM QAAYPHEAID RRIPFATTPS FSHTFDYSGD DQKSNVVLLQ NNFQTAFPSD 420 VNNTGEVYNA VNGYEQPRTC NTIMSSESGI VRRARPTRDE QFKTNPMQGT AQRRIRLSKI 480 EHVSCGMVKV KDESCTQEQH NSKPIIAVEK AAENHASDDE SAICTNHACK QRKVPKSIAN 540 ASKGLRNFLL LGRAPFRSKT SSNCALWSSV FVVSASVLVS LAAFTNIWGY LKF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-44 | 21 | 175 | 14 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.1277 | 0.0 | flower| leaf| pod| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g093050.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC119415 | 0.0 | AC119415.13 Medicago truncatula clone mth2-27n2, complete sequence. | |||
GenBank | AC126789 | 0.0 | AC126789.20 Medicago truncatula clone mth2-36n23, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003602412.1 | 0.0 | NAC domain-containing protein 62 | ||||
TrEMBL | G7J930 | 0.0 | G7J930_MEDTR; NAC transcription factor-like protein | ||||
STRING | AES72664 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.1 | 3e-93 | NAC transcription factor-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g093050.1 |
Entrez Gene | 11423667 |
Publications ? help Back to Top | |||
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