PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g088110.2 | ||||||||
Common Name | MTR_3g088110 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | NAC | ||||||||
Protein Properties | Length: 289aa MW: 33062.4 Da PI: 7.9655 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.9 | 4e-53 | 7 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeelv++yL++k++++++ + +i+e+d+yk++PwdLp +++ +ekewyfFs+rd+ky++g+r+nra+ sgyWkatg dk++ + Medtr3g088110.2 7 LPPGFRFHPTDEELVMHYLCRKCTSQPIAV-PIIAEIDLYKYDPWDLPGMATYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGH 99 79**************************99.88***************7777899*************************************99 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 + vg+kk Lvfy g+apkg kt+W+mheyrl Medtr3g088110.2 100 --PKPVGIKKALVFYAGKAPKGDKTNWIMHEYRL 131 ..789***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-63 | 4 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.043 | 7 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.6E-28 | 8 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MASELQLPPG FRFHPTDEEL VMHYLCRKCT SQPIAVPIIA EIDLYKYDPW DLPGMATYGE 60 KEWYFFSPRD RKYPNGSRPN RAAGSGYWKA TGADKPIGHP KPVGIKKALV FYAGKAPKGD 120 KTNWIMHEYR LADVDRSIRK KNSLRLDDWV LCRIYNKKGT IEKQPSNSVV NRKTEHSEIE 180 DRKPEIVTRG GGLPPHPPPQ TTAGIRDYMY FDTSDSIPKL HTDSSCSEQV VSPEFASEVQ 240 SEPKWNEWDK NLEFPYNYID ATLNTGFGSQ FQNTNPLQDM FMYLPKTF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 8e-80 | 3 | 163 | 11 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.4556 | 0.0 | leaf| pod| root| seed| stem |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00121 | DAP | Transfer from AT1G01720 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g088110.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN099384 | 0.0 | JN099384.1 Medicago sativa NAC domain protein NAC1 (NAC1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003602038.1 | 0.0 | NAC domain-containing protein 2 | ||||
Swissprot | Q39013 | 1e-146 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | G7J4X6 | 0.0 | G7J4X6_MEDTR; NAC-like transcription factor | ||||
STRING | AES72289 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-149 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g088110.2 |
Entrez Gene | 11416125 |