PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g086790.1
Common NameMTR_3g086790
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HD-ZIP
Protein Properties Length: 303aa    MW: 34625.4 Da    PI: 4.8489
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g086790.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-1860113356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k++++  +q+++Le+ Fe ++++  e++e+LA +lgL+ rqV vWFqNrRa++k
  Medtr3g086790.1  60 KKRRLRVDQVKALEKNFEVENKLEPERKEKLAIELGLQPRQVAVWFQNRRARWK 113
                      45578899*********************************************9 PP
2HD-ZIP_I/II122.71.8e-3959151193
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      ekkrrl  +qvk+LE++Fe e+kLeperK++la eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++ydalk + +++ +++++ ++e+ke
  Medtr3g086790.1  59 EKKRRLRVDQVKALEKNFEVENKLEPERKEKLAIELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLKFDAIAQDNKAFHKEIKE 151
                      69**************************************************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.56E-1950117IPR009057Homeodomain-like
PROSITE profilePS5007117.03855115IPR001356Homeobox domain
SMARTSM003891.1E-1658119IPR001356Homeobox domain
CDDcd000869.18E-1660116No hitNo description
PfamPF000467.3E-1660113IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-1963122IPR009057Homeodomain-like
PRINTSPR000311.8E-58695IPR000047Helix-turn-helix motif
PROSITE patternPS00027090113IPR017970Homeobox, conserved site
PRINTSPR000311.8E-595111IPR000047Helix-turn-helix motif
PfamPF021831.2E-16115156IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MKRLNNTSDS FSTPLITISP STEEHSPRNK HVYGMEFQSM MLDGFEEEGC VEETGHHSEK  60
KRRLRVDQVK ALEKNFEVEN KLEPERKEKL AIELGLQPRQ VAVWFQNRRA RWKTKQLERD  120
YGVLKANYDA LKLKFDAIAQ DNKAFHKEIK ELKSKLGEEE KSTINVLVKE ELTMLESCDE  180
DKHNPSSETS NPSSESKDHL DYDCIINNND VGIGETSSLF PVDLKDGSSD SDSSAISSSG  240
VLQSQQHLLL SPESSSMNCF QYQKSYHVKM EEHNFLSADE ACNFFSDEQA PTLQWYCPDQ  300
WS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107115RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.32280.0flower| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g086790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0523850.0BT052385.1 Medicago truncatula clone MTYFD_FE_FF_FG1G-K-20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003601919.10.0homeobox-leucine zipper protein ATHB-6
TrEMBLG7J3770.0G7J377_MEDTR; Homeobox associated leucine zipper protein
STRINGAES721700.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.17e-54homeobox protein 16
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]