PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g085050.2 | ||||||||
Common Name | MTR_3g085050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | CAMTA | ||||||||
Protein Properties | Length: 918aa MW: 103073 Da PI: 6.2436 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 160.6 | 2.9e-50 | 14 | 129 | 3 | 117 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 +e kkrwlk+ e++ iL+n++ ++t + ++p+ gs+ L+n++++r+frkDG++w+kkkdg+tv E+he+LKvg+ve+l+cyYah+een++fq Medtr3g085050.2 14 QEaKKRWLKPIEVLYILQNHDTCKFTDFPLNQPRGGSVYLFNKRVMRFFRKDGHNWRKKKDGRTVSEAHERLKVGNVEALNCYYAHGEENRSFQ 107 5669****************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhylev 117 rr+yw+L+ e+e++vlvhy+e+ Medtr3g085050.2 108 RRSYWMLNPEYEHVVLVHYRET 129 ********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 70.624 | 9 | 135 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 8.3E-63 | 12 | 130 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 6.8E-44 | 15 | 128 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 7.7E-6 | 389 | 462 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 1.82E-15 | 389 | 473 | IPR014756 | Immunoglobulin E-set |
Pfam | PF01833 | 1.2E-5 | 389 | 466 | IPR002909 | IPT domain |
CDD | cd00102 | 3.63E-5 | 389 | 473 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 2.5E-16 | 585 | 680 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.91 | 586 | 680 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 6.84E-17 | 588 | 680 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 1.0E-8 | 603 | 680 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.13E-13 | 606 | 678 | No hit | No description |
PROSITE profile | PS50088 | 11.114 | 619 | 651 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.0048 | 619 | 648 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 470 | 658 | 687 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 17 | 736 | 758 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 6.02E-12 | 737 | 838 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PROSITE profile | PS50096 | 8.114 | 737 | 765 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.055 | 786 | 808 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.279 | 787 | 816 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 2.3E-4 | 788 | 807 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.023 | 809 | 831 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.011 | 811 | 834 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 1.8E-4 | 812 | 831 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 918 aa Download sequence Send to blast |
MLPGLQYNIN DLFQEAKKRW LKPIEVLYIL QNHDTCKFTD FPLNQPRGGS VYLFNKRVMR 60 FFRKDGHNWR KKKDGRTVSE AHERLKVGNV EALNCYYAHG EENRSFQRRS YWMLNPEYEH 120 VVLVHYRETN EGTSNSGPVT QSSPFSQSRS SYTTPNPETT STVGDSCEPN QNFSSPGFLE 180 VTSDIVIMNN GTDHVEKTNA QALRQLEEQL SLNDDSFTEI PPFYSEHEIP VAFAEPDDHK 240 QPYDGYNGTK DCSGNRYREL LDHDFPGGHE KTLSWTEMLE SSKSSFVNKL PEQHAYKEFE 300 NETPLSSFGR EMIANQETSY RIHPNSNNDE NSWFLLPQDT GGVQFSPYSS IETQGTNSDY 360 YETLFDQSQI QEPRDAYSSL TVGQKQKFTI TAVSPEYCYA NEATKVIIVG SFLCLPSDST 420 WACMFGDVEV PTEIIQDGVI CCEAPSHLLG KVALCITSGN KEPCSEIKEF EFRNKTNSCI 480 HCNVLETEVA HSPEELLLLV RFAEMLLSAS TIKDDSSESG GQFSTEQKAD DDSWSHIIDA 540 LLVGNVTSSG TINCLLQELL KDKLRHWLSC RSNERDEDAG CSLSKKEQGI IHIVSGLGFE 600 WALNPILSCG MNVNFRDING WTALHWAARF GREKMVTSLI AAGASAGAVT DPSSQDPNGK 660 TAASIAASNG HKGLAGYLAE VDLTSHLSSL TLEKCEVPKD SSELEAELTV SSVSKKNLEA 720 SDDEDSLKNT LGAVRNAAQA AARIQAAFRA HSFRKQMERE AASTTCLNGY VTGLGGIGGY 780 VRSSRDYHSA ALSIQKKYRG WKVRKEYLAF RQKVVTIQAH VRGYQTRRQY KLMIWAVGIL 840 DKVVLRWRRK RVGLRSSPQE IDSKEETDDE DFLKVFRQEK VHAAIQKALA RVISMVSSVP 900 ARHQYNRMLG MRRRAEV* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.7556 | 0.0 | leaf| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12218065}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g085050.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC147538 | 0.0 | AC147538.24 Medicago truncatula clone mth2-135c7, complete sequence. | |||
GenBank | CU571154 | 0.0 | CU571154.3 M.truncatula DNA sequence from clone MTH2-59O16 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003601756.2 | 0.0 | calmodulin-binding transcription activator 4 | ||||
Swissprot | Q9FYG2 | 0.0 | CMTA4_ARATH; Calmodulin-binding transcription activator 4 | ||||
TrEMBL | A0A072UZL9 | 0.0 | A0A072UZL9_MEDTR; Calmodulin-binding protein | ||||
STRING | XP_004502279.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67310.1 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g085050.2 |
Entrez Gene | 11443052 |
Publications ? help Back to Top | |||
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