PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g084750.2
Common NameMTR_3g084750
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 412aa    MW: 47374.4 Da    PI: 9.5514
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g084750.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.6e-05173196123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      ++C  Cg+ F +++ L++H +  H
  Medtr3g084750.2 173 HVCRVCGRKFYTNEKLVNHFKQlH 196
                      79*****************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.99173201IPR007087Zinc finger, C2H2
PROSITE patternPS000280175196IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.40.50.10105.5E-8176197IPR029060PIN domain-like
CDDcd061673.25E-15190327No hitNo description
PfamPF019361.4E-8245328IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10105.5E-8248333IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MRGSVDGYLG SKDITCICLG SSDETYILSF SLFSFGSQLR VKKRGQFIFS LFMLSILKFR  60
GIFYTIKATS FRHCHSWGHN RIFISDKNPN EKLCRVGLFW DLDNKPPNSI PPYEVANKLR  120
IAAASFGVVR HMVAYANSHT FSNVPHIVRE RRKERELLYR LEDKGVIKRN EPHVCRVCGR  180
KFYTNEKLVN HFKQLHEREH AKRLNRIESA RGSRKVKLVG QYAMKMEKYK KAASAVLTPK  240
VGYGLADELK RAGFWVQTVL DRPQAADIAL QKHMVDMMDH RRVECLVLVS DDSDFVDVIK  300
EAKLRCLKTV VIGDFSSDGV LKRTADTAFS WEEILMGKAK KEAVSVVENW KDRDILKRLE  360
WTYNPEVDKK KLNLDDVVPE TSGDDDIDDD YKDDRGPWWK LDSDDNGVAN R*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.143190.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g084750.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1474840.0AC147484.21 Medicago truncatula clone mth2-52b4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024635450.10.0uncharacterized protein LOC11429074
RefseqXP_024635451.10.0uncharacterized protein LOC11429074
RefseqXP_024635452.10.0uncharacterized protein LOC11429074
TrEMBLA0A072V0L10.0A0A072V0L1_MEDTR; C2H2 type zinc finger protein
STRINGAES719770.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75002533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-106C2H2 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]