![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr3g080100.1 | ||||||||
Common Name | MTR_3g080100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 256aa MW: 29767.3 Da PI: 4.7863 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.5 | 9.6e-18 | 62 | 112 | 6 | 56 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ +q+++Le+ Fe ++++ e++ +LA+ lgL+ rqV++WFqNrRa+ k Medtr3g080100.1 62 RLGYDQVKALEKSFELDNKLEPERKVKLAEDLGLQPRQVSIWFQNRRARTK 112 56679********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 124.1 | 6.8e-40 | 58 | 150 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl +qvk+LE+sFe ++kLeperKv+la++Lglqprqv +WFqnrRARtktkqlE+dy++Lk+++d lk e ++L++e+e+L+++l+e Medtr3g080100.1 58 EKKRRLGYDQVKALEKSFELDNKLEPERKVKLAEDLGLQPRQVSIWFQNRRARTKTKQLERDYSVLKSNFDVLKVEYTNLQQENETLTRKLRE 150 69**************************************************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.73 | 54 | 114 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.7E-16 | 57 | 118 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.62E-13 | 59 | 115 | No hit | No description |
SuperFamily | SSF46689 | 1.28E-17 | 59 | 125 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 5.1E-15 | 61 | 112 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-18 | 64 | 121 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 9.0E-6 | 85 | 94 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 89 | 112 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 9.0E-6 | 94 | 110 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.6E-14 | 114 | 155 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 256 aa Download sequence Send to blast |
MKRFNNSETM ASLLSMYQSK EVDVDQRNEA KGYSEEFQAM LDRLEQEDSY EDGSPMLEKK 60 RRLGYDQVKA LEKSFELDNK LEPERKVKLA EDLGLQPRQV SIWFQNRRAR TKTKQLERDY 120 SVLKSNFDVL KVEYTNLQQE NETLTRKLRE LKAKLLRVES NELEKEVECP ISRGIERGGS 180 ESNSSGIIKE ESNVDSPMCF NGSLPSSMIN LVHYYDSRGS QENVFQNQFM RMEEQNFLSN 240 SELFSFFSVD QSPTL* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 106 | 114 | RRARTKTKQ |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Localized primarily to the hypocotyl of germinating seedlings. {ECO:0000269|PubMed:12678559}. | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that acts as a positive regulator of ABA-responsiveness, mediating the inhibitory effect of ABA on growth during seedling establishment. Binds to the DNA sequence 5'-CAATNATTG-3'. {ECO:0000269|PubMed:12678559}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr3g080100.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Down-regulated by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:12678559, ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CU024864 | 0.0 | CU024864.5 M.truncatula DNA sequence from clone MTH2-9F11 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003601381.1 | 0.0 | homeobox-leucine zipper protein ATHB-5 | ||||
Swissprot | P46667 | 7e-47 | ATHB5_ARATH; Homeobox-leucine zipper protein ATHB-5 | ||||
TrEMBL | G7J6Q0 | 0.0 | G7J6Q0_MEDTR; Homeobox associated leucine zipper protein | ||||
STRING | AES71632 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1868 | 34 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G65310.1 | 2e-44 | homeobox protein 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr3g080100.1 |
Entrez Gene | 11429040 |
Publications ? help Back to Top | |||
---|---|---|---|
|