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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g065020.2 | ||||||||
Common Name | MTR_3g065020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | C2H2 | ||||||||
Protein Properties | Length: 239aa MW: 26423.4 Da PI: 6.6739 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.3 | 0.00025 | 88 | 110 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Medtr3g065020.2 88 FSCNYCRRKFYSSQALGGHQNAH 110 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.76E-6 | 85 | 115 | No hit | No description |
PROSITE profile | PS50157 | 11.385 | 88 | 115 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 90 | 110 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MKPIFDLEVE ATEEYESDVS SHVASTISTH QIETSTGSYS NSLSNSDSIS LDLTLNFNNN 60 DLVVRDSTGI SFSSTSESSN ELTIQRVFSC NYCRRKFYSS QALGGHQNAH KRERTLAKRA 120 MRIGLFTERY ACLASLPLNG SFRALGIKTH SSLHHGFSPP TIRPSPEIKS NVRFKQGSIG 180 HPIFLEDDET ELMWQGSFHQ VTKGGSNTHQ SSNMCFSEVN VKPLVDIENS APELTLKL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.9721 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g065020.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC148818 | 0.0 | AC148818.15 Medicago truncatula clone mth2-39c7, complete sequence. | |||
GenBank | BT137756 | 0.0 | BT137756.1 Medicago truncatula clone JCVI-FLMt-15N18 unknown mRNA. | |||
GenBank | CR940306 | 0.0 | CR940306.3 M.truncatula DNA sequence from clone MTH2-10B11 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003600679.1 | 1e-177 | zinc finger protein 4 | ||||
Refseq | XP_024633962.1 | 1e-177 | zinc finger protein 4 | ||||
Refseq | XP_024633963.1 | 1e-177 | zinc finger protein 4 | ||||
Refseq | XP_024633964.1 | 1e-177 | zinc finger protein 4 | ||||
TrEMBL | G7J8Q3 | 1e-176 | G7J8Q3_MEDTR; Putative transcription factor C2H2 family | ||||
STRING | AES70930 | 1e-177 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66140.1 | 2e-45 | zinc finger protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g065020.2 |
Entrez Gene | 11409715 |
Publications ? help Back to Top | |||
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