PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g061510.2 | ||||||||
Common Name | MTR_3g061510, NF-YA5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | NF-YA | ||||||||
Protein Properties | Length: 330aa MW: 35830 Da PI: 6.5157 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 102.8 | 3.2e-32 | 170 | 226 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQyq+Il+RRq+Rak+e e+kl +ksrkpylheSRh+hAlrR+Rg+gGrF Medtr3g061510.2 170 QEPVYVNAKQYQGILRRRQARAKAELERKL-IKSRKPYLHESRHQHALRRARGTGGRF 226 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.3E-35 | 168 | 229 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.453 | 169 | 229 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.4E-27 | 171 | 226 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 7.3E-24 | 172 | 194 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 174 | 194 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 7.3E-24 | 203 | 226 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MQPKSETANQ PRSGPHSFQP GGVYSEPWWR GVGYNPVAQT MSGANSSSLD CPNGDSESNE 60 EGQSLSNSER NEEDDDAAKD SQPAAPNQSG NYGQEQGMQN TASSAVIREE CLTQTPQLEL 120 VGHSIACATN PYQDPYYGGM MAAYPHQPLG YPPFIGVPHA RMPLPLEMAQ EPVYVNAKQY 180 QGILRRRQAR AKAELERKLI KSRKPYLHES RHQHALRRAR GTGGRFAKKT DGEASGKDNG 240 SGPVLSSQSI SSSGSELLPS DSAETWNSPN MRQDARGSNE NGGSSYHNNN NGMQSSRYQG 300 ERVEEGDCSG QLRVSISSNE ASQRRLAIQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-18 | 170 | 226 | 2 | 58 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.4093 | 0.0 | flower| leaf| root| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g061510.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ918270 | 0.0 | JQ918270.1 Medicago truncatula nuclear transcription factor Y subunit A5 (NF-YA5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003600468.2 | 0.0 | nuclear transcription factor Y subunit A-1 | ||||
Refseq | XP_024635478.1 | 0.0 | nuclear transcription factor Y subunit A-1 | ||||
Swissprot | Q9LXV5 | 2e-82 | NFYA1_ARATH; Nuclear transcription factor Y subunit A-1 | ||||
TrEMBL | G7IYA5 | 0.0 | G7IYA5_MEDTR; CCAAT-binding transcription factor | ||||
STRING | AES70718 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12840.4 | 7e-81 | nuclear factor Y, subunit A1 |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g061510.2 |
Entrez Gene | 11443562 |
Publications ? help Back to Top | |||
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