PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g061340.1 | ||||||||
Common Name | MTR_140s0009, MTR_3g061340 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | B3 | ||||||||
Protein Properties | Length: 275aa MW: 31703.5 Da PI: 10.1912 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42.3 | 1.4e-13 | 19 | 102 | 11 | 99 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 ++++r+ +p++f+++hg s + ++ ++g +W+v+ +k g+++++kGWk F + L g v+F +++ s+f +v+++ k Medtr3g061340.1 19 TNLQRIKIPNEFTRRHGVG--LSNPVLIKPPDGTKWKVYW--KKINGEIWFEKGWKTFTENYSLGHGFLVLFNYEEGtSKF--LVHILGK 102 456789**********644..55569999***********..99999***************************9755777..9999876 PP | |||||||
2 | B3 | 43.5 | 5.7e-14 | 182 | 271 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl.iy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 ff++l+++++l + rl++p+ ++ ++ + ++ + rsW+vkl +y + k gr+ l++GW+ F+++ gL++gD++vF+l+++++ Medtr3g061340.1 182 FFTILIKPNHLVETRLCVPNLEG-VIE----NKEKYVVLQIGKRSWNVKLlRYyEAKNGRH-LSAGWSLFASESGLQSGDVCVFELTNKQDL-- 267 67777777777777777776654.222....3336889999*********65544444455.899********************9865555.. PP EEEE CS B3 93 vvkv 96 v+k+ Medtr3g061340.1 268 VFKI 271 5554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.337 | 9 | 103 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.78E-14 | 10 | 100 | No hit | No description |
SuperFamily | SSF101936 | 1.86E-17 | 11 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.6E-17 | 12 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.4E-9 | 12 | 103 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.6E-11 | 19 | 101 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.75E-13 | 178 | 273 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.5E-14 | 178 | 273 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 4.0E-11 | 182 | 271 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.28E-11 | 182 | 274 | No hit | No description |
SMART | SM01019 | 0.0011 | 182 | 271 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.984 | 182 | 274 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MARGKTTLPF RFFKIILQTN LQRIKIPNEF TRRHGVGLSN PVLIKPPDGT KWKVYWKKIN 60 GEIWFEKGWK TFTENYSLGH GFLVLFNYEE GTSKFLVHIL GKNAVEIDYD ENVDHSDDES 120 CQILDEWPNQ KTGRRPPLDS PRPRKKVRGE IKKTTERTTS LNWPMGARAR EVAAKFISSN 180 PFFTILIKPN HLVETRLCVP NLEGVIENKE KYVVLQIGKR SWNVKLLRYY EAKNGRHLSA 240 GWSLFASESG LQSGDVCVFE LTNKQDLVFK IHVL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 141 | 147 | RPRKKVR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g061340.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT009511 | 0.0 | CT009511.9 M.truncatula DNA sequence from clone MTH2-69I7 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003600452.1 | 0.0 | B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | G8A2Z5 | 0.0 | G8A2Z5_MEDTR; Transcriptional factor B3 family protein | ||||
STRING | AES70703 | 0.0 | (Medicago truncatula) | ||||
STRING | AES85833 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 4e-29 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g061340.1 |
Entrez Gene | 11438033 |
Publications ? help Back to Top | |||
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