PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g061340.1
Common NameMTR_140s0009, MTR_3g061340
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 275aa    MW: 31703.5 Da    PI: 10.1912
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g061340.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.31.4e-13191021199
                      HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
               B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                      ++++r+ +p++f+++hg     s  + ++ ++g +W+v+   +k  g+++++kGWk F +   L  g  v+F +++  s+f  +v+++ k
  Medtr3g061340.1  19 TNLQRIKIPNEFTRRHGVG--LSNPVLIKPPDGTKWKVYW--KKINGEIWFEKGWKTFTENYSLGHGFLVLFNYEEGtSKF--LVHILGK 102
                      456789**********644..55569999***********..99999***************************9755777..9999876 PP
2B343.55.7e-14182271196
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl.iy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                      ff++l+++++l + rl++p+     ++    ++ + ++ +   rsW+vkl +y + k gr+ l++GW+ F+++ gL++gD++vF+l+++++   
  Medtr3g061340.1 182 FFTILIKPNHLVETRLCVPNLEG-VIE----NKEKYVVLQIGKRSWNVKLlRYyEAKNGRH-LSAGWSLFASESGLQSGDVCVFELTNKQDL-- 267
                      67777777777777777776654.222....3336889999*********65544444455.899********************9865555.. PP

                      EEEE CS
               B3  93 vvkv 96 
                      v+k+
  Medtr3g061340.1 268 VFKI 271
                      5554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.3379103IPR003340B3 DNA binding domain
CDDcd100173.78E-1410100No hitNo description
SuperFamilySSF1019361.86E-1711103IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.6E-1712103IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.4E-912103IPR003340B3 DNA binding domain
PfamPF023622.6E-1119101IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-13178273IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.5E-14178273IPR015300DNA-binding pseudobarrel domain
PfamPF023624.0E-11182271IPR003340B3 DNA binding domain
CDDcd100179.28E-11182274No hitNo description
SMARTSM010190.0011182271IPR003340B3 DNA binding domain
PROSITE profilePS5086311.984182274IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MARGKTTLPF RFFKIILQTN LQRIKIPNEF TRRHGVGLSN PVLIKPPDGT KWKVYWKKIN  60
GEIWFEKGWK TFTENYSLGH GFLVLFNYEE GTSKFLVHIL GKNAVEIDYD ENVDHSDDES  120
CQILDEWPNQ KTGRRPPLDS PRPRKKVRGE IKKTTERTTS LNWPMGARAR EVAAKFISSN  180
PFFTILIKPN HLVETRLCVP NLEGVIENKE KYVVLQIGKR SWNVKLLRYY EAKNGRHLSA  240
GWSLFASESG LQSGDVCVFE LTNKQDLVFK IHVL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141147RPRKKVR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g061340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0095110.0CT009511.9 M.truncatula DNA sequence from clone MTH2-69I7 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003600452.10.0B3 domain-containing transcription factor VRN1
TrEMBLG8A2Z50.0G8A2Z5_MEDTR; Transcriptional factor B3 family protein
STRINGAES707030.0(Medicago truncatula)
STRINGAES858330.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-29B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]