PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g061330.1
Common NameMTR_140s0010, MTR_3g061330
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 252aa    MW: 29429.6 Da    PI: 10.31
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g061330.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.53.2e-15191011199
                      HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      ++++r+ +p+kf++++g     s  + ++ ++g +W+v+   +k  g+++++kGWk F +   L  g  vvF+++++s+f   v++f +
  Medtr3g061330.1  19 TNLHRIQIPNKFTRRYGVH--LSNPVLIKPPDGTKWKVYW--KKINGEIWFEKGWKYFTENYSLGHGSLVVFEYKRTSKF--DVHIFGR 101
                      567899**********855..66679999***********..99999***************************999999..8988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.9579102IPR003340B3 DNA binding domain
CDDcd100173.33E-151199No hitNo description
Gene3DG3DSA:2.40.330.101.3E-2011102IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-2111102IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.5E-1312102IPR003340B3 DNA binding domain
PfamPF023627.6E-1319101IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MARRNSTLPI RFFKIILQTN LHRIQIPNKF TRRYGVHLSN PVLIKPPDGT KWKVYWKKIN  60
GEIWFEKGWK YFTENYSLGH GSLVVFEYKR TSKFDVHIFG RNAVEIDYSS CDSDDENDNV  120
DHSDDDESVE ILDEWLNWKK AKQRSPFVSP RPHKKVRGDD EKTTKRTSSI NWPKDVRAQK  180
VAQNFISNNP FFTILIKPNH IADSQLFVPL DLKGIIENKE KNVLLQIGKK SWNVKLLRYS  240
EILNGRRLSA G*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g061330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0095110.0CT009511.9 M.truncatula DNA sequence from clone MTH2-69I7 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003600451.10.0B3 domain-containing protein At1g49475
TrEMBLG8A2Z60.0G8A2Z6_MEDTR; Plant-specific B3-DNA-binding domain protein
STRINGAES707020.0(Medicago truncatula)
STRINGAES858340.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.12e-17B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]