PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g061330.1 | ||||||||
Common Name | MTR_140s0010, MTR_3g061330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | B3 | ||||||||
Protein Properties | Length: 252aa MW: 29429.6 Da PI: 10.31 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.5 | 3.2e-15 | 19 | 101 | 11 | 99 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++++r+ +p+kf++++g s + ++ ++g +W+v+ +k g+++++kGWk F + L g vvF+++++s+f v++f + Medtr3g061330.1 19 TNLHRIQIPNKFTRRYGVH--LSNPVLIKPPDGTKWKVYW--KKINGEIWFEKGWKYFTENYSLGHGSLVVFEYKRTSKF--DVHIFGR 101 567899**********855..66679999***********..99999***************************999999..8988876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.957 | 9 | 102 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.33E-15 | 11 | 99 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.3E-20 | 11 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.12E-21 | 11 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 3.5E-13 | 12 | 102 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.6E-13 | 19 | 101 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MARRNSTLPI RFFKIILQTN LHRIQIPNKF TRRYGVHLSN PVLIKPPDGT KWKVYWKKIN 60 GEIWFEKGWK YFTENYSLGH GSLVVFEYKR TSKFDVHIFG RNAVEIDYSS CDSDDENDNV 120 DHSDDDESVE ILDEWLNWKK AKQRSPFVSP RPHKKVRGDD EKTTKRTSSI NWPKDVRAQK 180 VAQNFISNNP FFTILIKPNH IADSQLFVPL DLKGIIENKE KNVLLQIGKK SWNVKLLRYS 240 EILNGRRLSA G* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g061330.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT009511 | 0.0 | CT009511.9 M.truncatula DNA sequence from clone MTH2-69I7 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003600451.1 | 0.0 | B3 domain-containing protein At1g49475 | ||||
TrEMBL | G8A2Z6 | 0.0 | G8A2Z6_MEDTR; Plant-specific B3-DNA-binding domain protein | ||||
STRING | AES70702 | 0.0 | (Medicago truncatula) | ||||
STRING | AES85834 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01580.1 | 2e-17 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g061330.1 |
Entrez Gene | 11443561 |
Publications ? help Back to Top | |||
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