PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g061320.1
Common NameMTR_140s0011, MTR_3g061320
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 280aa    MW: 32681.8 Da    PI: 10.284
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g061320.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.24e-1519991197
                     HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                     ++++r+ +p+kf+++hg     s  + ++ ++g +W+v+   +k  g+++++kGWk F +   L  g  vvFk++g+s+f   v+++
  Medtr3g061320.1 19 TNLQRIKIPNKFTRKHGVG--LSNPVLIKPPDGTKWKVYW--KKINGEIWFEKGWKYFIENYSLGHGCLVVFKYKGDSKF--DVHIL 99
                     456789**********644..55569999***********..99999*****************************9999..66665 PP
2B337.64e-12187278196
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl.iyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                      ff++l+++++l  +rl +p+     +   ++++k+++  +   rsW+vkl ++ k+ ++  l++ W+ F+++ gL++g ++vF+l+++++  ++
  Medtr3g061320.1 187 FFTILIKPNHLVANRLNVPNFKG-VI---ENKEKDVM-LQIGKRSWNVKLlCWYKHTQGRRLSARWSLFARESGLQQGNVCVFELINKEGLVFK 275
                      77888888888888888886553.22...33344555.66799*******77788888899*************************98888777 PP

                      EEE CS
               B3  94 vkv 96 
                      v+v
  Medtr3g061320.1 276 VHV 278
                      776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.5069102IPR003340B3 DNA binding domain
SuperFamilySSF1019365.89E-2010102IPR015300DNA-binding pseudobarrel domain
CDDcd100171.27E-131199No hitNo description
Gene3DG3DSA:2.40.330.101.7E-2011102IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.1E-1412102IPR003340B3 DNA binding domain
PfamPF023621.8E-121998IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-14183279IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-12184279IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.123187279IPR003340B3 DNA binding domain
SMARTSM010192.2E-4187277IPR003340B3 DNA binding domain
PfamPF023622.0E-9187278IPR003340B3 DNA binding domain
CDDcd100171.14E-10187279No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MARGNSTFPI HFFKIILQTN LQRIKIPNKF TRKHGVGLSN PVLIKPPDGT KWKVYWKKIN  60
GEIWFEKGWK YFIENYSLGH GCLVVFKYKG DSKFDVHILG QNAVEIDYDP SCDGYDEKND  120
IDHSDDESVE ILEEWLNQKN ARQRSPFVSP RPHKKVRLRK LLKELHHWPR GARAQEVAQN  180
FISCNPFFTI LIKPNHLVAN RLNVPNFKGV IENKEKDVML QIGKRSWNVK LLCWYKHTQG  240
RRLSARWSLF ARESGLQQGN VCVFELINKE GLVFKVHVF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g061320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0095110.0CT009511.9 M.truncatula DNA sequence from clone MTH2-69I7 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003600453.11e-146B3 domain-containing transcription factor VRN1
TrEMBLG7IY870.0G7IY87_MEDTR; Plant-specific B3-DNA-binding domain protein
STRINGAES707010.0(Medicago truncatula)
STRINGAES858350.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-19B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]