PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g061320.1 | ||||||||
Common Name | MTR_140s0011, MTR_3g061320 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | B3 | ||||||||
Protein Properties | Length: 280aa MW: 32681.8 Da PI: 10.284 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.2 | 4e-15 | 19 | 99 | 11 | 97 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++++r+ +p+kf+++hg s + ++ ++g +W+v+ +k g+++++kGWk F + L g vvFk++g+s+f v+++ Medtr3g061320.1 19 TNLQRIKIPNKFTRKHGVG--LSNPVLIKPPDGTKWKVYW--KKINGEIWFEKGWKYFIENYSLGHGCLVVFKYKGDSKF--DVHIL 99 456789**********644..55569999***********..99999*****************************9999..66665 PP | |||||||
2 | B3 | 37.6 | 4e-12 | 187 | 278 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl.iyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ff++l+++++l +rl +p+ + ++++k+++ + rsW+vkl ++ k+ ++ l++ W+ F+++ gL++g ++vF+l+++++ ++ Medtr3g061320.1 187 FFTILIKPNHLVANRLNVPNFKG-VI---ENKEKDVM-LQIGKRSWNVKLlCWYKHTQGRRLSARWSLFARESGLQQGNVCVFELINKEGLVFK 275 77888888888888888886553.22...33344555.66799*******77788888899*************************98888777 PP EEE CS B3 94 vkv 96 v+v Medtr3g061320.1 276 VHV 278 776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.506 | 9 | 102 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.89E-20 | 10 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.27E-13 | 11 | 99 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.7E-20 | 11 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 6.1E-14 | 12 | 102 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-12 | 19 | 98 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-14 | 183 | 279 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.1E-12 | 184 | 279 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.123 | 187 | 279 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.2E-4 | 187 | 277 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-9 | 187 | 278 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.14E-10 | 187 | 279 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MARGNSTFPI HFFKIILQTN LQRIKIPNKF TRKHGVGLSN PVLIKPPDGT KWKVYWKKIN 60 GEIWFEKGWK YFIENYSLGH GCLVVFKYKG DSKFDVHILG QNAVEIDYDP SCDGYDEKND 120 IDHSDDESVE ILEEWLNQKN ARQRSPFVSP RPHKKVRLRK LLKELHHWPR GARAQEVAQN 180 FISCNPFFTI LIKPNHLVAN RLNVPNFKGV IENKEKDVML QIGKRSWNVK LLCWYKHTQG 240 RRLSARWSLF ARESGLQQGN VCVFELINKE GLVFKVHVF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g061320.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT009511 | 0.0 | CT009511.9 M.truncatula DNA sequence from clone MTH2-69I7 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003600453.1 | 1e-146 | B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | G7IY87 | 0.0 | G7IY87_MEDTR; Plant-specific B3-DNA-binding domain protein | ||||
STRING | AES70701 | 0.0 | (Medicago truncatula) | ||||
STRING | AES85835 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-19 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g061320.1 |
Entrez Gene | 11442747 |
Publications ? help Back to Top | |||
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