PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g061310.1 | ||||||||
Common Name | MTR_140s0012, MTR_3g061310 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | B3 | ||||||||
Protein Properties | Length: 286aa MW: 32992.8 Da PI: 10.3895 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.4 | 1.4e-14 | 19 | 98 | 11 | 96 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++++r+ +p++f++++g ++ + ++ ++g +W+v+ +k g+++++kGWk+F + L+ g vvFk++g+s+f v + Medtr3g061310.1 19 TNLQRIQIPNNFTRRYGVGLTN--PVLIKAPDGTKWKVYW--KKINGEIWFEKGWKHFTENYSLQHGCLVVFKYKGTSKF--DVLI 98 4567899*********644334..59999***********..99999****************************99999..5554 PP | |||||||
2 | B3 | 38.4 | 2.2e-12 | 191 | 284 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl..iyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 ff++l+ +++l gr ++p+ +++ ++ke+ l + + rsW+vkl +y++ g l++GW+ Fv++ gL+ ++vF+l+++++ + Medtr3g061310.1 191 FFTILILPNHLVAGRPRVPNIHLKGVIENKEK--NL-VLQIGERSWKVKLlaSYERETG-RRLSAGWSLFVNESGLQPENVCVFELINKENLVF 280 55555555666666667777777555333333..34.466789*******444444444.469***********************98777766 PP EEEE CS B3 93 vvkv 96 +v+v Medtr3g061310.1 281 KVHV 284 6666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.943 | 9 | 102 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.53E-19 | 11 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.57E-13 | 11 | 99 | No hit | No description |
SMART | SM01019 | 4.7E-14 | 12 | 102 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.2E-19 | 12 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.3E-12 | 19 | 96 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.0E-16 | 184 | 285 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.96E-14 | 185 | 285 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.58E-9 | 191 | 285 | No hit | No description |
PROSITE profile | PS50863 | 10.955 | 191 | 285 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.7E-10 | 191 | 284 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.8E-4 | 191 | 283 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MARRNATLPI RFFKIILQTN LQRIQIPNNF TRRYGVGLTN PVLIKAPDGT KWKVYWKKIN 60 GEIWFEKGWK HFTENYSLQH GCLVVFKYKG TSKFDVLILG NNAVEIDYDS SCDTDDENGN 120 VGQNDDESLE ISDEWRNQKI ARKRPPLFYP RPHKKFSGEN KKSTKRTSSL NRSNRARVEE 180 VAAKFTSSNP FFTILILPNH LVAGRPRVPN IHLKGVIENK EKNLVLQIGE RSWKVKLLAS 240 YERETGRRLS AGWSLFVNES GLQPENVCVF ELINKENLVF KVHVF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g061310.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT009511 | 0.0 | CT009511.9 M.truncatula DNA sequence from clone MTH2-69I7 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024634637.1 | 0.0 | B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | G7IY86 | 0.0 | G7IY86_MEDTR; Transcriptional factor B3 family protein | ||||
STRING | AES70700 | 0.0 | (Medicago truncatula) | ||||
STRING | AES85836 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 7e-28 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g061310.1 |
Entrez Gene | 11443178 |
Publications ? help Back to Top | |||
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