PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g061310.1
Common NameMTR_140s0012, MTR_3g061310
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 286aa    MW: 32992.8 Da    PI: 10.3895
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g061310.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.41.4e-1419981196
                     HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                     ++++r+ +p++f++++g   ++   + ++ ++g +W+v+   +k  g+++++kGWk+F +   L+ g  vvFk++g+s+f   v +
  Medtr3g061310.1 19 TNLQRIQIPNNFTRRYGVGLTN--PVLIKAPDGTKWKVYW--KKINGEIWFEKGWKHFTENYSLQHGCLVVFKYKGTSKF--DVLI 98
                     4567899*********644334..59999***********..99999****************************99999..5554 PP
2B338.42.2e-12191284196
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl..iyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                      ff++l+ +++l  gr ++p+ +++   ++ke+   l + +   rsW+vkl  +y++  g   l++GW+ Fv++ gL+   ++vF+l+++++  +
  Medtr3g061310.1 191 FFTILILPNHLVAGRPRVPNIHLKGVIENKEK--NL-VLQIGERSWKVKLlaSYERETG-RRLSAGWSLFVNESGLQPENVCVFELINKENLVF 280
                      55555555666666667777777555333333..34.466789*******444444444.469***********************98777766 PP

                      EEEE CS
               B3  93 vvkv 96 
                      +v+v
  Medtr3g061310.1 281 KVHV 284
                      6666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.9439102IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-1911102IPR015300DNA-binding pseudobarrel domain
CDDcd100174.57E-131199No hitNo description
SMARTSM010194.7E-1412102IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.2E-1912102IPR015300DNA-binding pseudobarrel domain
PfamPF023622.3E-121996IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-16184285IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-14185285IPR015300DNA-binding pseudobarrel domain
CDDcd100171.58E-9191285No hitNo description
PROSITE profilePS5086310.955191285IPR003340B3 DNA binding domain
PfamPF023623.7E-10191284IPR003340B3 DNA binding domain
SMARTSM010194.8E-4191283IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MARRNATLPI RFFKIILQTN LQRIQIPNNF TRRYGVGLTN PVLIKAPDGT KWKVYWKKIN  60
GEIWFEKGWK HFTENYSLQH GCLVVFKYKG TSKFDVLILG NNAVEIDYDS SCDTDDENGN  120
VGQNDDESLE ISDEWRNQKI ARKRPPLFYP RPHKKFSGEN KKSTKRTSSL NRSNRARVEE  180
VAAKFTSSNP FFTILILPNH LVAGRPRVPN IHLKGVIENK EKNLVLQIGE RSWKVKLLAS  240
YERETGRRLS AGWSLFVNES GLQPENVCVF ELINKENLVF KVHVF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g061310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0095110.0CT009511.9 M.truncatula DNA sequence from clone MTH2-69I7 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024634637.10.0B3 domain-containing transcription factor VRN1
TrEMBLG7IY860.0G7IY86_MEDTR; Transcriptional factor B3 family protein
STRINGAES707000.0(Medicago truncatula)
STRINGAES858360.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-28B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]