PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g061300.1 | ||||||||
Common Name | MTR_140s0013, MTR_3g061300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | B3 | ||||||||
Protein Properties | Length: 128aa MW: 14510.8 Da PI: 10.1845 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44.7 | 2.4e-14 | 31 | 122 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl.iyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ff++l+++ +l+++r+++p ++ ++ + ++ + rsW++kl y+ ++ l++GW+ F+++ gL++gD++vF+l+++++ ++ Medtr3g061300.1 31 FFTILINPTHLAENRVCVPTLNG----VIE-NKEKYVMLQIGKRSWNLKLlPYCEARNVRRLSAGWSLFARESGLQAGDVCVFELINKKDLVFN 119 88999999999999999886543....222.2336889999*********44566666678************************988887666 PP EEE CS B3 94 vkv 96 +++ Medtr3g061300.1 120 IHI 122 665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.8E-15 | 27 | 125 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.39E-14 | 27 | 125 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.829 | 31 | 126 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.9E-11 | 31 | 122 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.50E-13 | 31 | 124 | No hit | No description |
SMART | SM01019 | 3.6E-6 | 31 | 126 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
MKTSERTTSW NWPKGARAQE VALKFISTNP FFTILINPTH LAENRVCVPT LNGVIENKEK 60 YVMLQIGKRS WNLKLLPYCE ARNVRRLSAG WSLFARESGL QAGDVCVFEL INKKDLVFNI 120 HITKSDS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g061300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT009511 | 1e-135 | CT009511.9 M.truncatula DNA sequence from clone MTH2-69I7 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024634637.1 | 7e-68 | B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | G8A2Z9 | 9e-90 | G8A2Z9_MEDTR; B3 DNA-binding domain protein | ||||
STRING | AES70699 | 1e-90 | (Medicago truncatula) | ||||
STRING | AES85837 | 1e-90 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 5e-14 | related to vernalization1 1 |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g061300.1 |
Entrez Gene | 11442746 |
Publications ? help Back to Top | |||
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