PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g031100.1
Common NameMTR_3g031100
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 245aa    MW: 28017.8 Da    PI: 4.8253
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g031100.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.91.5e-191151343
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                     i nks+r  tf kR +gi+KKA+ELS+LC++ev+ ii++++
  Medtr3g031100.1 11 IINKSKRMATFRKRTEGIMKKANELSTLCGVEVCAIIYGEN 51
                     77*************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.035151IPR002100Transcription factor, MADS-box
SMARTSM004329.4E-23160IPR002100Transcription factor, MADS-box
CDDcd002663.33E-31285No hitNo description
SuperFamilySSF554557.46E-25295IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-10323IPR002100Transcription factor, MADS-box
PfamPF003193.9E-181151IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGRKKLKLQY IINKSKRMAT FRKRTEGIMK KANELSTLCG VEVCAIIYGE NHGQAEVWPS  60
AIGLERVLHK FENLSELKRN KNMVDLYSFW MQRIEKAKEK YEKAMMENKK AEMTNFIRQF  120
IHTRNYNIGD LSLNDINYLT TLINDNMKEV DQRLDSMVTQ ADEQVVNGAE AIKDGDLLAS  180
TNIAQVPLSG GDTLNNMDEV VDTHGYETNM NYGLQSDEQL PMDFLMPPFD DFDFDFDPNG  240
FGSI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g031100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU6515990.0CU651599.5 M.truncatula DNA sequence from clone MTH2-116D19 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024634662.11e-162agamous-like MADS-box protein AGL80
TrEMBLG7IWW40.0G7IWW4_MEDTR; MADS-box transcription factor family protein
STRINGAES695270.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1816226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.24e-25M-type_MADS family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]