PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g028520.1 | ||||||||
Common Name | MTR_3g027650, MTR_3g028520 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | bHLH | ||||||||
Protein Properties | Length: 407aa MW: 45431.2 Da PI: 5.6864 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.4 | 1.1e-12 | 334 | 379 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+ l Pk+ +k s a++L +AveYIk+Lq Medtr3g028520.1 334 SIAERVRRTRISDRIKKLQGLFPKS----DKQTSTADMLDLAVEYIKDLQ 379 689*********************9....788*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.176 | 328 | 378 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.1E-15 | 331 | 394 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.20E-11 | 332 | 383 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.5E-14 | 333 | 393 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-11 | 334 | 384 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-9 | 334 | 379 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MGAMYEELRR NQEMDSSSII HSKQHYQQQN SGLLMRYNSA PTSLFTNLID NNAQNFINNE 60 ESFTNESYLP STSSEMDTML SKLISSNNGW NNSEENLQEF DVKPVKQEIG ESVAQQNGNY 120 SYGGSELIYQ GFSNGSGNGF YGSFGGVNTM ESDDSNQSKI GVRNCSNLIR QKSSPAEFFS 180 NENGFATLTL REVESFKANG ISNGTLNFSS RPSTCLKRMP QIAENGIQSL ESNCDQTINL 240 VNENGSSKFT NEFWDNSAFN AHKTENEDEI MFSTTNGLDS QEADFGYQNL GLTHHLSLPS 300 SSTKMTSMEK FLQVQGSVPC KIRAKRGFAT HPRSIAERVR RTRISDRIKK LQGLFPKSDK 360 QTSTADMLDL AVEYIKDLQE QVQILTDCKD KCKCASHEKK HCKPCS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.2176 | 0.0 | leaf| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g028520.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT140187 | 0.0 | BT140187.1 Medicago truncatula clone JCVI-FLMt-20F22 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003599090.2 | 0.0 | transcription factor bHLH130 | ||||
Refseq | XP_013459160.1 | 0.0 | transcription factor bHLH130 | ||||
TrEMBL | G7IWI2 | 0.0 | G7IWI2_MEDTR; Putative transcription factor bHLH family | ||||
STRING | AES69341 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4005 | 33 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 2e-43 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g028520.1 |
Entrez Gene | 11421936 | 25488755 |
Publications ? help Back to Top | |||
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