PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr3g010660.1

Common Name

MTR_3g010660

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

bZIP

Protein Properties

Length: 323aa MW: 35998.3 Da PI: 6.4151

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr3g010660.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	50.4	4.8e-16	252	303	5	57
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 ++++r++kNRe+A rsR+RK+a++ eLe kv Le+eN++L+ke +el+++ a Medtr3g010660.1 252 RKQKRMIKNRESAARSRARKQAYTTELEIKVSRLEEENDKLRKE-KELENMLA 303 689***************************************77.67777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.8E-9	248	304	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.323	250	295	IPR004827	Basic-leucine zipper domain
CDD	cd14707	1.19E-21	252	298	No hit	No description
Gene3D	G3DSA:1.20.5.170	8.9E-14	252	301	No hit	No description
SuperFamily	SSF57959	9.38E-11	252	297	No hit	No description
Pfam	PF00170	1.8E-13	252	297	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	255	270	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MGSQVVDESN NENHSQFQPL ARQNSMYNLT LDEVQNHLGD LGKPLSSMNL DELLKNVWTV 60 EANQSIRMEN ENTAQAGEVV FQRQPNLSLT GPLSKKTVDE VWRDIQQSND HEEVKSQEIQ 120 STLGEMTLED FLVKAGVVSA ASSNRKNTNG PTPKVSVVES NVALPQFSPH GPWIQYAQPH 180 YQHPQQSVMA TYVPSQIIAQ SLHMAAGAPS DSVPYTDGQV ALASPVIGNL SDTQKSARKR 240 GPEDMIERTV ERKQKRMIKN RESAARSRAR KQAYTTELEI KVSRLEEEND KLRKEKELEN 300 MLANAPPPEP KCQLRRVSSA SF*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269\|PubMed:15642716}.
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269\|PubMed:12376636}.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr3g010660.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT030192	0.0	CT030192.6 M.truncatula DNA sequence from clone MTH2-16D16 on chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003598354.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	8e-87	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	G7IVG7	0.0	G7IVG7_MEDTR; BZIP transcription factor
STRING	AES68605	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1320	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	8e-85	ABA-responsive element binding protein 3

Link Out ? help Back to Top
Phytozome	Medtr3g010660.1
Entrez Gene	11428003

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]