PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g006370.1 | ||||||||
Common Name | MTR_3g006370 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | FAR1 | ||||||||
Protein Properties | Length: 230aa MW: 26401 Da PI: 7.833 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 88.4 | 1e-27 | 65 | 153 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA++vGF +r+ + ++s+r+g+i r+f C+keg+ + + k r++ra+tr gCka++++k +++gkw++tk++++HnH+l+ Medtr3g006370.1 65 FYDEYARHVGFVMRVMSCRRSERDGRILARRFGCNKEGHCVSIQGKLGPVRKPRASTREGCKAMIHIKYDQSGKWMITKFVKDHNHPLV 153 9*****************************************99999****************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.8E-25 | 65 | 153 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MESRLVDRSD GAEVSGDGNL VEPNDGCRSA KSYSGRELGI SDHDNAVKEP YEGMEFVSED 60 AAKIFYDEYA RHVGFVMRVM SCRRSERDGR ILARRFGCNK EGHCVSIQGK LGPVRKPRAS 120 TREGCKAMIH IKYDQSGKWM ITKFVKDHNH PLVVSPREAR QTMDEKDKKI QELTVELRIK 180 KRLCVTYQEQ LKCYMNIVEE HSDKLSARIH HILDNLKEYE SIEELLHQT* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.4930 | 0.0 | flower| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g006370.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT144425 | 0.0 | BT144425.1 Medicago truncatula clone JCVI-FLMt-6J23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013458769.1 | 1e-171 | protein FAR1-RELATED SEQUENCE 2 | ||||
Refseq | XP_024633927.1 | 1e-171 | protein FAR1-RELATED SEQUENCE 2 | ||||
TrEMBL | A0A072UTY6 | 1e-170 | A0A072UTY6_MEDTR; FAR-RED impaired response-like protein | ||||
STRING | XP_004507548.1 | 1e-140 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF965 | 31 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 1e-101 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g006370.1 |
Entrez Gene | 25488459 |
Publications ? help Back to Top | |||
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