PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g005495.1 | ||||||||
Common Name | MTR_3g005495 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | B3 | ||||||||
Protein Properties | Length: 475aa MW: 54499.2 Da PI: 8.6421 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 34.4 | 3.8e-11 | 146 | 220 | 12 | 88 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrs 88 +++ ++p +fa+eh ++ + + +l++ +g++Wev + ++ s++ + +t+G +F+++n+L f F+l++r+ Medtr3g005495.1 146 QNNYAYVPGEFAKEHLKP-N--VPFMLQNYQGKQWEVSCVLDRASKTpMRITSGFCRFARENNLSKEVFYNFELIKRK 220 4566899********433.3..459**************99999988899***********************99863 PP | |||||||
2 | B3 | 32.9 | 1.2e-10 | 243 | 333 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k+ +ps + + +++p f++ +g++ + t++ ++g +W+++l +k+++ +++ + Wk+F++ L+ g f+ Fk++g+s+f v Medtr3g005495.1 243 FKKAILPSPIHDKE-IRIPEVFITIYGSE--LKNVATITVPDGLTWKLEL--KKRGEDVYFCNKWKQFAEYYSLRYGCFMSFKYEGNSKF--SV 329 67777788888776.9*******888755..556788899**********..**********************************9999..77 PP EEE- CS B3 95 kvfr 98 +f+ Medtr3g005495.1 330 IIFD 333 7776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.73E-16 | 16 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-13 | 21 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0036 | 21 | 105 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.24E-8 | 28 | 103 | No hit | No description |
PROSITE profile | PS50863 | 10.264 | 29 | 105 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 7.768 | 135 | 231 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-9 | 136 | 222 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.31E-7 | 138 | 225 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.029 | 141 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.4E-9 | 145 | 220 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.9E-18 | 239 | 333 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.63E-17 | 240 | 334 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.58E-11 | 241 | 333 | No hit | No description |
PROSITE profile | PS50863 | 10.926 | 242 | 335 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-11 | 243 | 335 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.9E-8 | 245 | 333 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 8.036 | 380 | 474 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.69E-10 | 382 | 471 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.5E-9 | 383 | 468 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.041 | 386 | 474 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.66E-7 | 387 | 465 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 475 aa Download sequence Send to blast |
MVSWSLSTVH RNPAITMHCS LCGVHITRIP DEFITRFGNE LDNVATITVP DGREWNMELK 60 KCGGQIFFCN NWQQFAEYYC IYYGCYLDFK YEGNSKFNVV IYDRTSVEIS YPFQTRRTNG 120 EPNINCPSSA SNGINPKNTS FCSKVQNNYA YVPGEFAKEH LKPNVPFMLQ NYQGKQWEVS 180 CVLDRASKTP MRITSGFCRF ARENNLSKEV FYNFELIKRK PVVVLQATTS RTAEMEIRES 240 KHFKKAILPS PIHDKEIRIP EVFITIYGSE LKNVATITVP DGLTWKLELK KRGEDVYFCN 300 KWKQFAEYYS LRYGCFMSFK YEGNSKFSVI IFDVTSVEIC YPLKTPSTNG ETNTECPRPT 360 KRSRVEINYA DDSPSEDEGT ELNPSFTSTY KYRTLYINAD FASKHLKRNV VVKLQNCNGG 420 EQWDVCCTRL GRSGLRLGKG FIKFATYNNL SNGDKCKVEL IKKSSPVVLQ LDLV* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.18799 | 0.0 | pod| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g005495.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT868737 | 0.0 | CT868737.2 M.truncatula DNA sequence from clone MTH2-32M24 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003598029.2 | 0.0 | B3 domain-containing protein REM8 | ||||
TrEMBL | A0A072UTW5 | 0.0 | A0A072UTW5_MEDTR; B3 DNA-binding domain protein | ||||
STRING | AES68284 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14054 | 8 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18960.1 | 2e-24 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g005495.1 |
Entrez Gene | 25488444 |
Publications ? help Back to Top | |||
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