PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g005495.1
Common NameMTR_3g005495
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 475aa    MW: 54499.2 Da    PI: 8.6421
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g005495.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.43.8e-111462201288
                      HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      +++  ++p +fa+eh ++ +  +  +l++ +g++Wev +  ++ s++ + +t+G  +F+++n+L    f  F+l++r+
  Medtr3g005495.1 146 QNNYAYVPGEFAKEHLKP-N--VPFMLQNYQGKQWEVSCVLDRASKTpMRITSGFCRFARENNLSKEVFYNFELIKRK 220
                      4566899********433.3..459**************99999988899***********************99863 PP
2B332.91.2e-10243333198
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f+k+ +ps  + +  +++p  f++ +g++   +   t++ ++g +W+++l  +k+++ +++ + Wk+F++   L+ g f+ Fk++g+s+f   v
  Medtr3g005495.1 243 FKKAILPSPIHDKE-IRIPEVFITIYGSE--LKNVATITVPDGLTWKLEL--KKRGEDVYFCNKWKQFAEYYSLRYGCFMSFKYEGNSKF--SV 329
                      67777788888776.9*******888755..556788899**********..**********************************9999..77 PP

                      EEE- CS
               B3  95 kvfr 98 
                       +f+
  Medtr3g005495.1 330 IIFD 333
                      7776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.73E-1616104IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-1321105IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.003621105IPR003340B3 DNA binding domain
CDDcd100171.24E-828103No hitNo description
PROSITE profilePS5086310.26429105IPR003340B3 DNA binding domain
PROSITE profilePS508637.768135231IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-9136222IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-7138225IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.029141229IPR003340B3 DNA binding domain
PfamPF023628.4E-9145220IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.9E-18239333IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.63E-17240334IPR015300DNA-binding pseudobarrel domain
CDDcd100176.58E-11241333No hitNo description
PROSITE profilePS5086310.926242335IPR003340B3 DNA binding domain
SMARTSM010191.5E-11243335IPR003340B3 DNA binding domain
PfamPF023627.9E-8245333IPR003340B3 DNA binding domain
PROSITE profilePS508638.036380474IPR003340B3 DNA binding domain
SuperFamilySSF1019365.69E-10382471IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-9383468IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.041386474IPR003340B3 DNA binding domain
CDDcd100171.66E-7387465No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MVSWSLSTVH RNPAITMHCS LCGVHITRIP DEFITRFGNE LDNVATITVP DGREWNMELK  60
KCGGQIFFCN NWQQFAEYYC IYYGCYLDFK YEGNSKFNVV IYDRTSVEIS YPFQTRRTNG  120
EPNINCPSSA SNGINPKNTS FCSKVQNNYA YVPGEFAKEH LKPNVPFMLQ NYQGKQWEVS  180
CVLDRASKTP MRITSGFCRF ARENNLSKEV FYNFELIKRK PVVVLQATTS RTAEMEIRES  240
KHFKKAILPS PIHDKEIRIP EVFITIYGSE LKNVATITVP DGLTWKLELK KRGEDVYFCN  300
KWKQFAEYYS LRYGCFMSFK YEGNSKFSVI IFDVTSVEIC YPLKTPSTNG ETNTECPRPT  360
KRSRVEINYA DDSPSEDEGT ELNPSFTSTY KYRTLYINAD FASKHLKRNV VVKLQNCNGG  420
EQWDVCCTRL GRSGLRLGKG FIKFATYNNL SNGDKCKVEL IKKSSPVVLQ LDLV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.187990.0pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g005495.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8687370.0CT868737.2 M.truncatula DNA sequence from clone MTH2-32M24 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003598029.20.0B3 domain-containing protein REM8
TrEMBLA0A072UTW50.0A0A072UTW5_MEDTR; B3 DNA-binding domain protein
STRINGAES682840.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14054820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.12e-24B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]