PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g005490.1 | ||||||||
Common Name | MTR_3g005490 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | B3 | ||||||||
Protein Properties | Length: 266aa MW: 30547.8 Da PI: 9.3906 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.8 | 6.8e-12 | 21 | 111 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f k+ +ps + ++ +++p f++++g++ + t++ ++g We++l +k+++ +++ + W++F++ + g f+ Fk++g+s+f +v Medtr3g005490.1 21 FMKAILPSPIHDTQ-IRIPDGFIKRFGNE--LKNVATITVPDGCDWEMEL--KKCGNDVYFCNKWQQFAEYYSIGYGSFLRFKYEGDSKF--NV 107 67778888888776.9*******999755..556888999**********..**********************************9999..88 PP EEE- CS B3 95 kvfr 98 +f+ Medtr3g005490.1 108 VIFD 111 8887 PP | |||||||
2 | B3 | 40.9 | 3.6e-13 | 173 | 260 | 11 | 99 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 lk++ +++ +fa+++ ++ + + +++++++g++Wev i ++s+++ +t+G + F ++n+L gD +vF+l++++ l+v++fr+ Medtr3g005490.1 173 LKRKYVYVNADFASKYLKP-N--VPIKIQTSHGEQWEVFGILhdANSSSAMKITRGFSIFQRDNNLSHGDYCVFELIKNNPLVLKVTMFRA 260 5677788889999999433.3..459999*********998887777777****************************9999999999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.6E-19 | 16 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.34E-19 | 16 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.30E-14 | 19 | 111 | No hit | No description |
PROSITE profile | PS50863 | 10.377 | 20 | 113 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.5E-10 | 21 | 113 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.4E-10 | 21 | 111 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-13 | 160 | 260 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.09E-12 | 161 | 260 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 8.9E-4 | 168 | 261 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.21E-10 | 170 | 259 | No hit | No description |
Pfam | PF02362 | 1.6E-10 | 173 | 260 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.093 | 195 | 261 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MQARRRSSVR PPAPEKDSKH FMKAILPSPI HDTQIRIPDG FIKRFGNELK NVATITVPDG 60 CDWEMELKKC GNDVYFCNKW QQFAEYYSIG YGSFLRFKYE GDSKFNVVIF DVTSVEICYP 120 FKTQSINGET NTKCHSPRKR SKVETSDNHA SKRSEEAAKE FNPKNPYFCS KILKRKYVYV 180 NADFASKYLK PNVPIKIQTS HGEQWEVFGI LHDANSSSAM KITRGFSIFQ RDNNLSHGDY 240 CVFELIKNNP LVLKVTMFRA ADYGD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 8e-14 | 136 | 263 | 21 | 145 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 8e-14 | 136 | 263 | 21 | 145 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.18799 | 0.0 | pod| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g005490.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT009492 | 0.0 | CT009492.5 M.truncatula DNA sequence from clone MTH2-93A21 on chromosome 3, complete sequence. | |||
GenBank | CT868737 | 0.0 | CT868737.2 M.truncatula DNA sequence from clone MTH2-32M24 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024635892.1 | 1e-138 | B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | G7IYF0 | 0.0 | G7IYF0_MEDTR; B3 DNA-binding domain protein | ||||
STRING | AES68282 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14054 | 8 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-23 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g005490.1 |
Entrez Gene | 11411752 |
Publications ? help Back to Top | |||
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