PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g005490.1
Common NameMTR_3g005490
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 266aa    MW: 30547.8 Da    PI: 9.3906
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g005490.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.86.8e-1221111198
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f k+ +ps  + ++ +++p  f++++g++   +   t++ ++g  We++l  +k+++ +++ + W++F++   +  g f+ Fk++g+s+f  +v
  Medtr3g005490.1  21 FMKAILPSPIHDTQ-IRIPDGFIKRFGNE--LKNVATITVPDGCDWEMEL--KKCGNDVYFCNKWQQFAEYYSIGYGSFLRFKYEGDSKF--NV 107
                      67778888888776.9*******999755..556888999**********..**********************************9999..88 PP

                      EEE- CS
               B3  95 kvfr 98 
                       +f+
  Medtr3g005490.1 108 VIFD 111
                      8887 PP
2B340.93.6e-131732601199
                      HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      lk++ +++  +fa+++ ++ +  + +++++++g++Wev  i    ++s+++ +t+G + F ++n+L  gD +vF+l++++   l+v++fr+
  Medtr3g005490.1 173 LKRKYVYVNADFASKYLKP-N--VPIKIQTSHGEQWEVFGILhdANSSSAMKITRGFSIFQRDNNLSHGDYCVFELIKNNPLVLKVTMFRA 260
                      5677788889999999433.3..459999*********998887777777****************************9999999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.6E-1916111IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-1916112IPR015300DNA-binding pseudobarrel domain
CDDcd100178.30E-1419111No hitNo description
PROSITE profilePS5086310.37720113IPR003340B3 DNA binding domain
SMARTSM010192.5E-1021113IPR003340B3 DNA binding domain
PfamPF023625.4E-1021111IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-13160260IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-12161260IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.9E-4168261IPR003340B3 DNA binding domain
CDDcd100173.21E-10170259No hitNo description
PfamPF023621.6E-10173260IPR003340B3 DNA binding domain
PROSITE profilePS508639.093195261IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MQARRRSSVR PPAPEKDSKH FMKAILPSPI HDTQIRIPDG FIKRFGNELK NVATITVPDG  60
CDWEMELKKC GNDVYFCNKW QQFAEYYSIG YGSFLRFKYE GDSKFNVVIF DVTSVEICYP  120
FKTQSINGET NTKCHSPRKR SKVETSDNHA SKRSEEAAKE FNPKNPYFCS KILKRKYVYV  180
NADFASKYLK PNVPIKIQTS HGEQWEVFGI LHDANSSSAM KITRGFSIFQ RDNNLSHGDY  240
CVFELIKNNP LVLKVTMFRA ADYGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A8e-1413626321145B3 domain-containing transcription factor VRN1
4i1k_B8e-1413626321145B3 domain-containing transcription factor VRN1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.187990.0pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g005490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0094920.0CT009492.5 M.truncatula DNA sequence from clone MTH2-93A21 on chromosome 3, complete sequence.
GenBankCT8687370.0CT868737.2 M.truncatula DNA sequence from clone MTH2-32M24 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024635892.11e-138B3 domain-containing transcription factor VRN1
TrEMBLG7IYF00.0G7IYF0_MEDTR; B3 DNA-binding domain protein
STRINGAES682820.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14054820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-23B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]