PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g005480.1 | ||||||||
Common Name | MTR_3g005480 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | B3 | ||||||||
Protein Properties | Length: 267aa MW: 30572 Da PI: 9.5097 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 39.1 | 1.3e-12 | 21 | 111 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f k+ +ps + ++ l++p +f++++g++ + t++ ++g We+kl +k+++ +++ + W++F++ + g f+ Fk++g+s+f v Medtr3g005480.1 21 FMKAILPSAIHDTK-LRIPDEFIKRFGNE--LKNVATITVPDGCDWEMKL--KKCGNDVYFCNKWQQFAEYYSIGYGSFLCFKYEGDSKF--SV 107 66777777777776.********999755..556888999**********..**********************************9999..77 PP EEE- CS B3 95 kvfr 98 +f+ Medtr3g005480.1 108 FIFD 111 7766 PP | |||||||
2 | B3 | 42.5 | 1.2e-13 | 173 | 260 | 11 | 98 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 lk + +++ +fa++h ++ + + ++l++++g++Wev + + + +s ++++++G F + n+L gD +vF+l++++ l+v++fr Medtr3g005480.1 173 LKGNYVYVNADFASKHLNP-N--VPIKLQNSHGKQWEVSCAMhdaKSSSTAMIISRGFPIFLRGNNLSHGDYCVFELINKTPDVLKVTMFR 260 56677888899**999433.3..45***************88864444455***************************9877778998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.0E-21 | 15 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.96E-20 | 17 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.24E-15 | 19 | 111 | No hit | No description |
PROSITE profile | PS50863 | 11.18 | 20 | 113 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-10 | 21 | 111 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-11 | 21 | 113 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-15 | 160 | 260 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.92E-13 | 161 | 260 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.22E-11 | 166 | 260 | No hit | No description |
SMART | SM01019 | 2.5E-5 | 168 | 262 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.3E-11 | 173 | 260 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.728 | 195 | 262 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MQARRRSSVR PPVAEKDSKH FMKAILPSAI HDTKLRIPDE FIKRFGNELK NVATITVPDG 60 CDWEMKLKKC GNDVYFCNKW QQFAEYYSIG YGSFLCFKYE GDSKFSVFIF DATSIEICYP 120 FKTQSTNGET KTKFHSPRKR SKVETSDNHA SKRAEEAAKE FNPKNPYFCS KILKGNYVYV 180 NADFASKHLN PNVPIKLQNS HGKQWEVSCA MHDAKSSSTA MIISRGFPIF LRGNNLSHGD 240 YCVFELINKT PDVLKVTMFR VIDYYV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 1e-14 | 134 | 264 | 17 | 145 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 1e-14 | 134 | 264 | 17 | 145 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.18799 | 0.0 | pod| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g005480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT009492 | 0.0 | CT009492.5 M.truncatula DNA sequence from clone MTH2-93A21 on chromosome 3, complete sequence. | |||
GenBank | CT868737 | 0.0 | CT868737.2 M.truncatula DNA sequence from clone MTH2-32M24 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024635892.1 | 1e-173 | B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | G7IYE9 | 0.0 | G7IYE9_MEDTR; B3 DNA-binding domain protein | ||||
STRING | AES68281 | 0.0 | (Medicago truncatula) | ||||
STRING | AES68283 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14054 | 8 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 6e-26 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g005480.1 |
Entrez Gene | 11405351 |
Publications ? help Back to Top | |||
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