PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g005480.1
Common NameMTR_3g005480
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 267aa    MW: 30572 Da    PI: 9.5097
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g005480.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.11.3e-1221111198
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f k+ +ps  + ++ l++p +f++++g++   +   t++ ++g  We+kl  +k+++ +++ + W++F++   +  g f+ Fk++g+s+f   v
  Medtr3g005480.1  21 FMKAILPSAIHDTK-LRIPDEFIKRFGNE--LKNVATITVPDGCDWEMKL--KKCGNDVYFCNKWQQFAEYYSIGYGSFLCFKYEGDSKF--SV 107
                      66777777777776.********999755..556888999**********..**********************************9999..77 PP

                      EEE- CS
               B3  95 kvfr 98 
                       +f+
  Medtr3g005480.1 108 FIFD 111
                      7766 PP
2B342.51.2e-131732601198
                      HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      lk + +++  +fa++h ++ +  + ++l++++g++Wev + +   + +s ++++++G   F + n+L  gD +vF+l++++   l+v++fr
  Medtr3g005480.1 173 LKGNYVYVNADFASKHLNP-N--VPIKLQNSHGKQWEVSCAMhdaKSSSTAMIISRGFPIFLRGNNLSHGDYCVFELINKTPDVLKVTMFR 260
                      56677888899**999433.3..45***************88864444455***************************9877778998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-2115113IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-2017112IPR015300DNA-binding pseudobarrel domain
CDDcd100175.24E-1519111No hitNo description
PROSITE profilePS5086311.1820113IPR003340B3 DNA binding domain
PfamPF023622.0E-1021111IPR003340B3 DNA binding domain
SMARTSM010191.5E-1121113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-15160260IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-13161260IPR015300DNA-binding pseudobarrel domain
CDDcd100172.22E-11166260No hitNo description
SMARTSM010192.5E-5168262IPR003340B3 DNA binding domain
PfamPF023622.3E-11173260IPR003340B3 DNA binding domain
PROSITE profilePS508639.728195262IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MQARRRSSVR PPVAEKDSKH FMKAILPSAI HDTKLRIPDE FIKRFGNELK NVATITVPDG  60
CDWEMKLKKC GNDVYFCNKW QQFAEYYSIG YGSFLCFKYE GDSKFSVFIF DATSIEICYP  120
FKTQSTNGET KTKFHSPRKR SKVETSDNHA SKRAEEAAKE FNPKNPYFCS KILKGNYVYV  180
NADFASKHLN PNVPIKLQNS HGKQWEVSCA MHDAKSSSTA MIISRGFPIF LRGNNLSHGD  240
YCVFELINKT PDVLKVTMFR VIDYYV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1413426417145B3 domain-containing transcription factor VRN1
4i1k_B1e-1413426417145B3 domain-containing transcription factor VRN1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.187990.0pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g005480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0094920.0CT009492.5 M.truncatula DNA sequence from clone MTH2-93A21 on chromosome 3, complete sequence.
GenBankCT8687370.0CT868737.2 M.truncatula DNA sequence from clone MTH2-32M24 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024635892.11e-173B3 domain-containing transcription factor VRN1
TrEMBLG7IYE90.0G7IYE9_MEDTR; B3 DNA-binding domain protein
STRINGAES682810.0(Medicago truncatula)
STRINGAES682830.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14054820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-26B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]