PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g005460.1 | ||||||||
Common Name | MTR_3g005460 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | B3 | ||||||||
Protein Properties | Length: 524aa MW: 60039.4 Da PI: 8.4404 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33.3 | 8.5e-11 | 262 | 354 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+ +ps + +++p +f++ +g++ + t++ ++g We+ l +k+++ y+ k W++F++ L+ g f+ F+++g+s+f Medtr3g005460.1 262 FKKAILPSPIYDKE-IRIPENFITMFGNE--LENVATVTVPDGCDWEMDL--KKCGEDvYFCNKEWQQFAEYYSLRYGCFLSFRYEGNSNF--S 348 67777788888776.9*******888755..556899999**********..9999888999*************************9999..8 PP EEEE-S CS B3 94 vkvfrk 99 v +f++ Medtr3g005460.1 349 VIIFDA 354 888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.9E-13 | 18 | 116 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.73E-15 | 21 | 116 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.63E-8 | 23 | 115 | No hit | No description |
PROSITE profile | PS50863 | 9.629 | 24 | 117 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.0E-4 | 25 | 117 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.53E-6 | 154 | 244 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 7.331 | 154 | 250 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.8E-9 | 154 | 245 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.94E-16 | 260 | 354 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-16 | 260 | 355 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.912 | 261 | 355 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.93E-11 | 261 | 353 | No hit | No description |
SMART | SM01019 | 6.3E-11 | 262 | 355 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-7 | 264 | 354 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.5E-12 | 412 | 517 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.12E-9 | 413 | 517 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 7.147 | 415 | 519 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.80E-6 | 418 | 517 | No hit | No description |
SMART | SM01019 | 0.044 | 420 | 519 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 524 aa Download sequence Send to blast |
MKPRPRRRVP STSPAAAAEK DSKHFMKAIL PPPDHTKEIR IPDEFITRFG NELDNVATIT 60 VPDALEWDME LKKCGGQIFF CNNWQQFAEY YSIYYGCYLD FKYEGNSKFN VVIYDTTSVE 120 ISYPFQTRRT NGEANINCPS SASERSKDAA NGINPKNTSF CSKVQNNYAY VPGEFAKEHL 180 KPNVPFMLQN SQKKQWEVSG ALDRPGKPAM RITIGIRRFL RENKLLDGVI CRFKLIKKKP 240 VVVIQVTASH MAEKEVRESI HFKKAILPSP IYDKEIRIPE NFITMFGNEL ENVATVTVPD 300 GCDWEMDLKK CGEDVYFCNK EWQQFAEYYS LRYGCFLSFR YEGNSNFSVI IFDATSVEIC 360 YPLKTPSTSG ETNTECPRPM KRSKVETSES PGKKVKSMSN YAYKRAEDAA NAFNPKNPHF 420 RSKITKGRHA YVPSIFASEY LKPNAPIKLL NSHREEWKVF GIEHNARSST RKAKSPAMQI 480 TQGFSQFIRE NDLSYGDCCV YELIEENPPV LEVTMFCVVD YWD* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.18799 | 0.0 | pod| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g005460.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT009492 | 0.0 | CT009492.5 M.truncatula DNA sequence from clone MTH2-93A21 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003598029.2 | 0.0 | B3 domain-containing protein REM8 | ||||
TrEMBL | G7IYE8 | 0.0 | G7IYE8_MEDTR; B3 DNA-binding domain protein | ||||
STRING | AES68280 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14054 | 8 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01580.1 | 1e-22 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g005460.1 |
Entrez Gene | 11405350 |
Publications ? help Back to Top | |||
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