PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g005440.1 | ||||||||
Common Name | MTR_3g005440 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | B3 | ||||||||
Protein Properties | Length: 443aa MW: 50677.1 Da PI: 8.7766 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.5 | 1.5e-10 | 254 | 332 | 14 | 98 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + ++++ +f++++g++ + t++ ++gr W+++l +k+++ +++ + W+eF+k L g + Fk++g+s+f v +f+ Medtr3g005440.1 254 KEIRISDEFITRFGIE--LKNVATVTATDGRDWRMRL--KKHGNDIFFYNEWQEFAKYYSLGCGCYLSFKYEGNSKF--SVVIFD 332 458999****999766..556899999**********..**********************************9999..887776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 0.0012 | 22 | 112 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-13 | 32 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.24E-16 | 32 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.4E-7 | 33 | 110 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 8.47E-9 | 36 | 110 | No hit | No description |
PROSITE profile | PS50863 | 10.518 | 36 | 112 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.9E-16 | 238 | 332 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.81E-16 | 240 | 333 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.616 | 241 | 334 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.2E-5 | 241 | 334 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-8 | 253 | 332 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.22E-8 | 256 | 332 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 443 aa Download sequence Send to blast |
MLPKFEPTWV GLVVLTWDQG VCFSLRFEVR LSLVQIPDEF ITRFGNELDN VATITVPDGR 60 EWDMELKKCG GQVFFCNNWQ HFAEYYSISY GCYLDFKYEG NSNFVVVIYD PTFVEISYPF 120 KTSSTNGDQS IKGPNSDSKR ANCAVGEFNP KNPYFHSKSI KGIFAYVPSG FAKKYLMLMV 180 PFIGFSKFAR ENNLLEGVTY VFELIKRKPV VVVLQVTASC TPPQGRSSQS LTEKEVRESE 240 HFKMDILPSP IHDKEIRISD EFITRFGIEL KNVATVTATD GRDWRMRLKK HGNDIFFYNE 300 WQEFAKYYSL GCGCYLSFKY EGNSKFSVVI FDVTSVEICY PLKTPSTNGE TNTQCPTPRK 360 SSRVETIGSQ VIKLKIRFGH AFKSAEVAAN EFNPKNPYFW LKNVTAKFAQ KYLMPNVPIA 420 LQNSQGKHWK VHCILYNPKS FS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g005440.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT009492 | 0.0 | CT009492.5 M.truncatula DNA sequence from clone MTH2-93A21 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003598025.2 | 0.0 | putative B3 domain-containing protein Os03g0621600 isoform X1 | ||||
TrEMBL | G7IYE6 | 0.0 | G7IYE6_MEDTR; B3 DNA-binding domain protein | ||||
STRING | AES68278 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14054 | 8 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-20 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g005440.1 |
Entrez Gene | 11408477 |
Publications ? help Back to Top | |||
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