PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g005440.1
Common NameMTR_3g005440
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 443aa    MW: 50677.1 Da    PI: 8.7766
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g005440.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.51.5e-102543321498
                      T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      + ++++ +f++++g++   +   t++ ++gr W+++l  +k+++ +++ + W+eF+k   L  g  + Fk++g+s+f   v +f+
  Medtr3g005440.1 254 KEIRISDEFITRFGIE--LKNVATVTATDGRDWRMRL--KKHGNDIFFYNEWQEFAKYYSLGCGCYLSFKYEGNSKF--SVVIFD 332
                      458999****999766..556899999**********..**********************************9999..887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.001222112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-1332112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-1632111IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-733110IPR003340B3 DNA binding domain
CDDcd100178.47E-936110No hitNo description
PROSITE profilePS5086310.51836112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.9E-16238332IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-16240333IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.616241334IPR003340B3 DNA binding domain
SMARTSM010192.2E-5241334IPR003340B3 DNA binding domain
PfamPF023622.1E-8253332IPR003340B3 DNA binding domain
CDDcd100172.22E-8256332No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MLPKFEPTWV GLVVLTWDQG VCFSLRFEVR LSLVQIPDEF ITRFGNELDN VATITVPDGR  60
EWDMELKKCG GQVFFCNNWQ HFAEYYSISY GCYLDFKYEG NSNFVVVIYD PTFVEISYPF  120
KTSSTNGDQS IKGPNSDSKR ANCAVGEFNP KNPYFHSKSI KGIFAYVPSG FAKKYLMLMV  180
PFIGFSKFAR ENNLLEGVTY VFELIKRKPV VVVLQVTASC TPPQGRSSQS LTEKEVRESE  240
HFKMDILPSP IHDKEIRISD EFITRFGIEL KNVATVTATD GRDWRMRLKK HGNDIFFYNE  300
WQEFAKYYSL GCGCYLSFKY EGNSKFSVVI FDVTSVEICY PLKTPSTNGE TNTQCPTPRK  360
SSRVETIGSQ VIKLKIRFGH AFKSAEVAAN EFNPKNPYFW LKNVTAKFAQ KYLMPNVPIA  420
LQNSQGKHWK VHCILYNPKS FS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g005440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0094920.0CT009492.5 M.truncatula DNA sequence from clone MTH2-93A21 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003598025.20.0putative B3 domain-containing protein Os03g0621600 isoform X1
TrEMBLG7IYE60.0G7IYE6_MEDTR; B3 DNA-binding domain protein
STRINGAES682780.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14054820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-20B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]