PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g005420.2 | ||||||||
Common Name | MTR_3g005420 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | B3 | ||||||||
Protein Properties | Length: 489aa MW: 56187.3 Da PI: 9.7974 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 39.1 | 1.4e-12 | 167 | 238 | 16 | 89 |
EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 16 lvlpkkfaeeh.ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 ++p fae++ +k + +l++++g++Wev++ +k+ +++ +t+G +F+++n+L eg + vF+l++r+ Medtr3g005420.2 167 AYVPSIFAEKYlTLK----VPFKLQNSQGKQWEVYCVLhNKGNSQMRITGGFGKFARENNLLEGVTYVFELIKRKP 238 4899*******6433....4599*************8756666669*************************98633 PP | |||||||
2 | B3 | 42.9 | 9e-14 | 398 | 483 | 12 | 99 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 k++ ++p++fae++ ++k + +l++++g++Wev + + +s+++ + kG ++Fv +n+L +D +v +l++++ l v++fr+ Medtr3g005420.2 398 KQNYTYIPRDFAEKYLKPK---VPTKLQNSDGKQWEVFCVPnTVGSSSMRIVKGFSNFVTDNNLSHRDYCVYELIKKKPVVLEVTMFRA 483 567789*********5453...348999***********65688888899*************************99888888888875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.5E-13 | 17 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.55E-8 | 19 | 112 | No hit | No description |
SuperFamily | SSF101936 | 1.69E-13 | 19 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.291 | 20 | 114 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.8E-7 | 21 | 111 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.5E-7 | 21 | 114 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-12 | 148 | 248 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.09E-11 | 150 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0045 | 158 | 246 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.9E-11 | 163 | 237 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.64E-10 | 168 | 237 | No hit | No description |
PROSITE profile | PS50863 | 8.445 | 186 | 247 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.3E-12 | 266 | 340 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.94E-12 | 267 | 341 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.77E-9 | 268 | 341 | No hit | No description |
PROSITE profile | PS50863 | 7.359 | 269 | 338 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0031 | 270 | 355 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.4E-17 | 384 | 483 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.8E-15 | 385 | 482 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.911 | 387 | 484 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.017 | 392 | 484 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-11 | 399 | 483 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 8.83E-11 | 403 | 482 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 489 aa Download sequence Send to blast |
MQPHRRRCGR SPAPEKASKH FMKAILPPPD HTKEIRIPNE FIKRFGNELK NVATITVPDG 60 RHEWEMGLKK CGEHVFLSNN WQQFAEYYCI YYGCYLDFNY QGNSKFNVVI YDTTSVEISY 120 SFKTPSTNGD QRIKGPNSAS KRENCAASEF NPKNPYFYSK SNRGFYAYVP SIFAEKYLTL 180 KVPFKLQNSQ GKQWEVYCVL HNKGNSQMRI TGGFGKFARE NNLLEGVTYV FELIKRKPVV 240 VLQVTAICTP PQGRSVQSMT EKEVRESKHF KKAILPSPIH DKEIRIPEDF ITMFGNELEK 300 VATVTVPDGR DWKMRLKKRG NDIFFSNEWE EFAKYYSLGV NGEPNTKCAS PTKRSKVETS 360 ECHGKKAKSV SKHASTRAEV AANEFKPKNP YFCSIIAKQN YTYIPRDFAE KYLKPKVPTK 420 LQNSDGKQWE VFCVPNTVGS SSMRIVKGFS NFVTDNNLSH RDYCVYELIK KKPVVLEVTM 480 FRAVDYLD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 4e-13 | 361 | 487 | 18 | 146 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 4e-13 | 361 | 487 | 18 | 146 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g005420.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT009492 | 0.0 | CT009492.5 M.truncatula DNA sequence from clone MTH2-93A21 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013458748.2 | 0.0 | putative B3 domain-containing protein Os03g0621600 isoform X2 | ||||
TrEMBL | A0A396IJ48 | 0.0 | A0A396IJ48_MEDTR; Putative transcription factor B3-Domain family | ||||
STRING | AES68276 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-19 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g005420.2 |
Entrez Gene | 11408476 |
Publications ? help Back to Top | |||
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