PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g005420.2
Common NameMTR_3g005420
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 489aa    MW: 56187.3 Da    PI: 9.7974
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g005420.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.11.4e-121672381689
                      EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
               B3  16 lvlpkkfaeeh.ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                       ++p  fae++  +k    +  +l++++g++Wev++   +k+ +++ +t+G  +F+++n+L eg + vF+l++r+ 
  Medtr3g005420.2 167 AYVPSIFAEKYlTLK----VPFKLQNSQGKQWEVYCVLhNKGNSQMRITGGFGKFARENNLLEGVTYVFELIKRKP 238
                      4899*******6433....4599*************8756666669*************************98633 PP
2B342.99e-143984831299
                      HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      k++  ++p++fae++ ++k   +  +l++++g++Wev +   + +s+++ + kG ++Fv +n+L  +D +v +l++++   l v++fr+
  Medtr3g005420.2 398 KQNYTYIPRDFAEKYLKPK---VPTKLQNSDGKQWEVFCVPnTVGSSSMRIVKGFSNFVTDNNLSHRDYCVYELIKKKPVVLEVTMFRA 483
                      567789*********5453...348999***********65688888899*************************99888888888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.5E-1317113IPR015300DNA-binding pseudobarrel domain
CDDcd100179.55E-819112No hitNo description
SuperFamilySSF1019361.69E-1319113IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.29120114IPR003340B3 DNA binding domain
PfamPF023622.8E-721111IPR003340B3 DNA binding domain
SMARTSM010194.5E-721114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-12148248IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-11150242IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0045158246IPR003340B3 DNA binding domain
PfamPF023623.9E-11163237IPR003340B3 DNA binding domain
CDDcd100177.64E-10168237No hitNo description
PROSITE profilePS508638.445186247IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.3E-12266340IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-12267341IPR015300DNA-binding pseudobarrel domain
CDDcd100174.77E-9268341No hitNo description
PROSITE profilePS508637.359269338IPR003340B3 DNA binding domain
SMARTSM010190.0031270355IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.4E-17384483IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.8E-15385482IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.911387484IPR003340B3 DNA binding domain
SMARTSM010190.017392484IPR003340B3 DNA binding domain
PfamPF023621.4E-11399483IPR003340B3 DNA binding domain
CDDcd100178.83E-11403482No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MQPHRRRCGR SPAPEKASKH FMKAILPPPD HTKEIRIPNE FIKRFGNELK NVATITVPDG  60
RHEWEMGLKK CGEHVFLSNN WQQFAEYYCI YYGCYLDFNY QGNSKFNVVI YDTTSVEISY  120
SFKTPSTNGD QRIKGPNSAS KRENCAASEF NPKNPYFYSK SNRGFYAYVP SIFAEKYLTL  180
KVPFKLQNSQ GKQWEVYCVL HNKGNSQMRI TGGFGKFARE NNLLEGVTYV FELIKRKPVV  240
VLQVTAICTP PQGRSVQSMT EKEVRESKHF KKAILPSPIH DKEIRIPEDF ITMFGNELEK  300
VATVTVPDGR DWKMRLKKRG NDIFFSNEWE EFAKYYSLGV NGEPNTKCAS PTKRSKVETS  360
ECHGKKAKSV SKHASTRAEV AANEFKPKNP YFCSIIAKQN YTYIPRDFAE KYLKPKVPTK  420
LQNSDGKQWE VFCVPNTVGS SSMRIVKGFS NFVTDNNLSH RDYCVYELIK KKPVVLEVTM  480
FRAVDYLD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A4e-1336148718146B3 domain-containing transcription factor VRN1
4i1k_B4e-1336148718146B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g005420.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0094920.0CT009492.5 M.truncatula DNA sequence from clone MTH2-93A21 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013458748.20.0putative B3 domain-containing protein Os03g0621600 isoform X2
TrEMBLA0A396IJ480.0A0A396IJ48_MEDTR; Putative transcription factor B3-Domain family
STRINGAES682760.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-19B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]