PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g005420.1
Common NameMTR_3g005420
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 543aa    MW: 62394.6 Da    PI: 9.6419
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g005420.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.81.6e-121862571689
                      EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
               B3  16 lvlpkkfaeeh.ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                       ++p  fae++  +k    +  +l++++g++Wev++   +k+ +++ +t+G  +F+++n+L eg + vF+l++r+ 
  Medtr3g005420.1 186 AYVPSIFAEKYlTLK----VPFKLQNSQGKQWEVYCVLhNKGNSQMRITGGFGKFARENNLLEGVTYVFELIKRKP 257
                      4899*******6433....4599*************8756666669*************************98633 PP
2B338.91.5e-12289379198
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f+k+ +ps  + +  +++p +f++ +g++   +k  t++ ++gr W+++l  +k+++ +++++ W+eF+k   L  g  + Fk++g+s+f   v
  Medtr3g005420.1 289 FKKAILPSPIHDKE-IRIPEDFITMFGNE--LEKVATVTVPDGRDWKMRL--KKRGNDIFFSNEWEEFAKYYSLGYGCYLSFKYEGNSKF--SV 375
                      67777888888776.9*******888755..67799999***********..**********************************9999..77 PP

                      EEE- CS
               B3  95 kvfr 98 
                       +f+
  Medtr3g005420.1 376 IIFD 379
                      7776 PP
3B342.61.1e-134525371299
                      HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      k++  ++p++fae++ ++k   +  +l++++g++Wev +   + +s+++ + kG ++Fv +n+L  +D +v +l++++   l v++fr+
  Medtr3g005420.1 452 KQNYTYIPRDFAEKYLKPK---VPTKLQNSDGKQWEVFCVPnTVGSSSMRIVKGFSNFVTDNNLSHRDYCVYELIKKKPVVLEVTMFRA 537
                      567789*********5453...348999***********65688888899*************************99888888888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.9E-1336132IPR015300DNA-binding pseudobarrel domain
CDDcd100179.62E-838131No hitNo description
SuperFamilySSF1019361.96E-1338132IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.29139133IPR003340B3 DNA binding domain
SMARTSM010194.5E-740133IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-12167267IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-11169261IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0045177265IPR003340B3 DNA binding domain
PfamPF023624.5E-11182256IPR003340B3 DNA binding domain
CDDcd100178.21E-10187256No hitNo description
PROSITE profilePS508638.445205266IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.7E-19285379IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.28E-18286380IPR015300DNA-binding pseudobarrel domain
CDDcd100173.03E-13287379No hitNo description
PROSITE profilePS5086312.097288381IPR003340B3 DNA binding domain
SMARTSM010191.7E-13289381IPR003340B3 DNA binding domain
PfamPF023625.6E-10291379IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.4E-17438537IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.2E-14439536IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.911441538IPR003340B3 DNA binding domain
CDDcd100179.04E-11444536No hitNo description
SMARTSM010190.017446538IPR003340B3 DNA binding domain
PfamPF023621.6E-11453537IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MQQHNVKLII IICIATNNTM QPHRRRCGRS PAPEKASKHF MKAILPPPDH TKEIRIPNEF  60
IKRFGNELKN VATITVPDGR HEWEMGLKKC GEHVFLSNNW QQFAEYYCIY YGCYLDFNYQ  120
GNSKFNVVIY DTTSVEISYS FKTPSTNGDQ RIKGPNSASK RENCAASEFN PKNPYFYSKS  180
NRGFYAYVPS IFAEKYLTLK VPFKLQNSQG KQWEVYCVLH NKGNSQMRIT GGFGKFAREN  240
NLLEGVTYVF ELIKRKPVVV LQVTAICTPP QGRSVQSMTE KEVRESKHFK KAILPSPIHD  300
KEIRIPEDFI TMFGNELEKV ATVTVPDGRD WKMRLKKRGN DIFFSNEWEE FAKYYSLGYG  360
CYLSFKYEGN SKFSVIIFDV TYVEICYPLK TPSVNGEPNT KCASPTKRSK VETSECHGKK  420
AKSVSKHAST RAEVAANEFK PKNPYFCSII AKQNYTYIPR DFAEKYLKPK VPTKLQNSDG  480
KQWEVFCVPN TVGSSSMRIV KGFSNFVTDN NLSHRDYCVY ELIKKKPVVL EVTMFRAVDY  540
LD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-1341554118146B3 domain-containing transcription factor VRN1
4i1k_B3e-1341554118146B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g005420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0094920.0CT009492.5 M.truncatula DNA sequence from clone MTH2-93A21 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003598025.20.0putative B3 domain-containing protein Os03g0621600 isoform X1
TrEMBLG7IYE40.0G7IYE4_MEDTR; B3 DNA-binding domain protein
STRINGAES682760.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14054820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-23B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]