PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr3g005420.1 | ||||||||
Common Name | MTR_3g005420 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 543aa MW: 62394.6 Da PI: 9.6419 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38.8 | 1.6e-12 | 186 | 257 | 16 | 89 |
EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 16 lvlpkkfaeeh.ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 ++p fae++ +k + +l++++g++Wev++ +k+ +++ +t+G +F+++n+L eg + vF+l++r+ Medtr3g005420.1 186 AYVPSIFAEKYlTLK----VPFKLQNSQGKQWEVYCVLhNKGNSQMRITGGFGKFARENNLLEGVTYVFELIKRKP 257 4899*******6433....4599*************8756666669*************************98633 PP | |||||||
2 | B3 | 38.9 | 1.5e-12 | 289 | 379 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k+ +ps + + +++p +f++ +g++ +k t++ ++gr W+++l +k+++ +++++ W+eF+k L g + Fk++g+s+f v Medtr3g005420.1 289 FKKAILPSPIHDKE-IRIPEDFITMFGNE--LEKVATVTVPDGRDWKMRL--KKRGNDIFFSNEWEEFAKYYSLGYGCYLSFKYEGNSKF--SV 375 67777888888776.9*******888755..67799999***********..**********************************9999..77 PP EEE- CS B3 95 kvfr 98 +f+ Medtr3g005420.1 376 IIFD 379 7776 PP | |||||||
3 | B3 | 42.6 | 1.1e-13 | 452 | 537 | 12 | 99 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 k++ ++p++fae++ ++k + +l++++g++Wev + + +s+++ + kG ++Fv +n+L +D +v +l++++ l v++fr+ Medtr3g005420.1 452 KQNYTYIPRDFAEKYLKPK---VPTKLQNSDGKQWEVFCVPnTVGSSSMRIVKGFSNFVTDNNLSHRDYCVYELIKKKPVVLEVTMFRA 537 567789*********5453...348999***********65688888899*************************99888888888875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.9E-13 | 36 | 132 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.62E-8 | 38 | 131 | No hit | No description |
SuperFamily | SSF101936 | 1.96E-13 | 38 | 132 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.291 | 39 | 133 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.5E-7 | 40 | 133 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-12 | 167 | 267 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.73E-11 | 169 | 261 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0045 | 177 | 265 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.5E-11 | 182 | 256 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 8.21E-10 | 187 | 256 | No hit | No description |
PROSITE profile | PS50863 | 8.445 | 205 | 266 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.7E-19 | 285 | 379 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.28E-18 | 286 | 380 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.03E-13 | 287 | 379 | No hit | No description |
PROSITE profile | PS50863 | 12.097 | 288 | 381 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.7E-13 | 289 | 381 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.6E-10 | 291 | 379 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.4E-17 | 438 | 537 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.2E-14 | 439 | 536 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.911 | 441 | 538 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.04E-11 | 444 | 536 | No hit | No description |
SMART | SM01019 | 0.017 | 446 | 538 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-11 | 453 | 537 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 543 aa Download sequence Send to blast |
MQQHNVKLII IICIATNNTM QPHRRRCGRS PAPEKASKHF MKAILPPPDH TKEIRIPNEF 60 IKRFGNELKN VATITVPDGR HEWEMGLKKC GEHVFLSNNW QQFAEYYCIY YGCYLDFNYQ 120 GNSKFNVVIY DTTSVEISYS FKTPSTNGDQ RIKGPNSASK RENCAASEFN PKNPYFYSKS 180 NRGFYAYVPS IFAEKYLTLK VPFKLQNSQG KQWEVYCVLH NKGNSQMRIT GGFGKFAREN 240 NLLEGVTYVF ELIKRKPVVV LQVTAICTPP QGRSVQSMTE KEVRESKHFK KAILPSPIHD 300 KEIRIPEDFI TMFGNELEKV ATVTVPDGRD WKMRLKKRGN DIFFSNEWEE FAKYYSLGYG 360 CYLSFKYEGN SKFSVIIFDV TYVEICYPLK TPSVNGEPNT KCASPTKRSK VETSECHGKK 420 AKSVSKHAST RAEVAANEFK PKNPYFCSII AKQNYTYIPR DFAEKYLKPK VPTKLQNSDG 480 KQWEVFCVPN TVGSSSMRIV KGFSNFVTDN NLSHRDYCVY ELIKKKPVVL EVTMFRAVDY 540 LD* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 3e-13 | 415 | 541 | 18 | 146 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 3e-13 | 415 | 541 | 18 | 146 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr3g005420.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CT009492 | 0.0 | CT009492.5 M.truncatula DNA sequence from clone MTH2-93A21 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003598025.2 | 0.0 | putative B3 domain-containing protein Os03g0621600 isoform X1 | ||||
TrEMBL | G7IYE4 | 0.0 | G7IYE4_MEDTR; B3 DNA-binding domain protein | ||||
STRING | AES68276 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14054 | 8 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G18990.1 | 4e-23 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr3g005420.1 |
Entrez Gene | 11408476 |
Publications ? help Back to Top | |||
---|---|---|---|
|