PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g461710.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 63aa MW: 7054.27 Da PI: 10.4771 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 102.5 | 1.5e-32 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gklyeyss Medtr2g461710.1 9 KKIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSNKGKLYEYSS 59 78***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.45 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.3E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.88E-30 | 2 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.35E-36 | 2 | 59 | No hit | No description |
PRINTS | PR00404 | 9.2E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.7E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.2E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.2E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 63 aa Download sequence Send to blast |
MGRGRVQLKK IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFSN KGKLYEYSSD 60 PC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-20 | 1 | 59 | 1 | 59 | MEF2C |
5f28_B | 3e-20 | 1 | 59 | 1 | 59 | MEF2C |
5f28_C | 3e-20 | 1 | 59 | 1 | 59 | MEF2C |
5f28_D | 3e-20 | 1 | 59 | 1 | 59 | MEF2C |
6byy_A | 3e-20 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6byy_B | 3e-20 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6byy_C | 3e-20 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6byy_D | 3e-20 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_A | 3e-20 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_B | 3e-20 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_C | 3e-20 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_D | 3e-20 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.6940 | 1e-101 | pod| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes early floral meristem identity in synergy with LEAFY. Displays a redundant function with CAULIFLOWER in the up-regulation of LEAFY. Required subsequently for the transition of an inflorescence meristem into a floral meristem, and for the normal development of sepals and petals in flowers. Regulates positively B class homeotic proteins (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g461710.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT052704 | 7e-99 | BT052704.1 Medicago truncatula clone MTYFD_FE_FF_FG1G-I-18 unknown mRNA. | |||
GenBank | BT143534 | 7e-99 | BT143534.1 Medicago truncatula clone JCVI-FLMt-8O8 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013464090.2 | 3e-38 | truncated transcription factor CAULIFLOWER A | ||||
Swissprot | Q39371 | 2e-35 | 3AP1_BRAOL; Floral homeotic protein APETALA 1 | ||||
TrEMBL | A0A072V8F9 | 1e-37 | A0A072V8F9_MEDTR; MADS-box transcription factor family protein | ||||
STRING | XP_004488426.1 | 7e-37 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 1e-37 | AGAMOUS-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g461710.1 |