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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Medtr2g105380.1 |
Common Name | MTR_080s0051, MTR_2g105380 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family |
ERF |
Protein Properties |
Length: 368aa MW: 40707.8 Da PI: 4.6189 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Medtr2g105380.1 | genome | Mt | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 61 | 2.7e-19 | 116 | 165 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
+y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++a +++++g
Medtr2g105380.1 116 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 165
69*******.**********954...4************************998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0070483 | Biological Process | detection of hypoxia |
GO:0005634 | Cellular Component | nucleus |
GO:0005886 | Cellular Component | plasma membrane |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 368 aa
Download sequence Send
to blast |
MCGGAIISDF ISTAAVVGGS RRVTADMLWP NLRKSSSRKP FFLDNDFEAE FREFKDDSDL 60 DDDDEGLLVG AKCFTFGSTN NKSSNSFVRG SSAAKVVASK SNEQGEKELK RKRKNQYRGI 120 RQRPWGKWAA EIRDPRKGVR VWLGTFNTAE EAARAYDAEA RRIRGKKAKV NFPEEAPNAS 180 SKRLKTNSET QLLDKNLNSF KCENIENYYS PVNQVEQRPL VNAQCANVGP FAGNGVQLAS 240 SDVTAYFSSE YSSNSFDYPD LCWGEQGPKT PEISSVFSAP IEGESQKNLQ SDNSQDMLPM 300 QNDSAKTHSE ELADIESQLK FFENSFDDNW SDASLAALLS EDTTQDCGNT VDLWSFDDLP 360 SIAGGVF*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1gcc_A | 2e-21 | 116 | 173 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 4e-21 | 115 | 175 | 13 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT147928 | 0.0 | BT147928.1 Medicago truncatula clone JCVI-FLMt-16H13 unknown mRNA. |