PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g104650.1
Common NameMTR_2g104650
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 280aa    MW: 31613.2 Da    PI: 5.798
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g104650.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.82.6e-1095140555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h + Er+RR+ + s++ eL  l+P +     kK +K+ ++++A++Y+k+L+
  Medtr2g104650.1  95 HIMSERNRRQLLTSKIIELSALIPGL-----KKIDKVHVVTEAINYMKQLE 140
                      8899**********************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.21190139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-1393151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.41E-795138No hitNo description
PfamPF000105.4E-895140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-1295151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-996145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MEEHLCHTNN TFDEEFLRDI LYQIPQDQFN VPIATTDLVN NSSINVSQHA EEMPTNSLSI  60
PTTEQHHDSL PLSSSTANQG SNSKKPRNTS DTLDHIMSER NRRQLLTSKI IELSALIPGL  120
KKIDKVHVVT EAINYMKQLE ERLKELEEDI KKKDAGSLST ITRSRVLIDK DIAIGEMNTE  180
ECYGRNESLL EVEARILEKE VLIKIYCGMQ EGIVVNIMSQ LQLLHLSITS INVLPFGNTL  240
DITIIAKMGD KYNLTIKDLV KKLRVVATLQ VSHNVQFHI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.188080.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g104650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597984.20.0transcription factor bHLH25
TrEMBLG7IMC50.0G7IMC5_MEDTR; Helix loop helix DNA-binding domain protein
STRINGAES682350.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15398711
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-34bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]