![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr2g104490.2 | ||||||||
Common Name | MTR_2g104490 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 298aa MW: 33355.9 Da PI: 5.2847 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.4 | 1.3e-08 | 138 | 183 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR ++ ++f L +P + kK++K iL +A+ Y+k Lq Medtr2g104490.2 138 HIMAERKRRLELSQKFIALSATIPGL-----KKMDKNYILGEAISYVKLLQ 183 899***********************.....9****************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.084 | 133 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.19E-15 | 136 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.22E-7 | 138 | 187 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.1E-14 | 138 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.7E-6 | 138 | 183 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.2E-9 | 139 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 298 aa Download sequence Send to blast |
MEESWEHWPL HSELGDVEVL LGQYCHQTSA DDEEEFLRDI ILQQPVTYSG SISSSNEMDG 60 SDCSKKKLHP SSSPFTPRTF ILSFDKSTII PATTTPESEE VSIPKSRSNN NKRSLEPKAK 120 ASNQTGKKSR SGSQYLDHIM AERKRRLELS QKFIALSATI PGLKKMDKNY ILGEAISYVK 180 LLQERVKELE DQNKNSKEST IILKKTDMCV SEDTTSNSDQ DCCKSPLFDV KARIMENEVL 240 IQMHCEKEND IEIKIYNVLE NLDLFVTASS VLAFGTSTLG FTIVAQVCIA ICKSLIS* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 141 | 146 | ERKRRL |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr2g104490.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003597966.1 | 0.0 | transcription factor bHLH18 | ||||
TrEMBL | A0A072VN90 | 0.0 | A0A072VN90_MEDTR; Helix loop helix DNA-binding domain protein | ||||
STRING | AES68217 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37850.1 | 3e-35 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr2g104490.2 |
Entrez Gene | 11433585 |
Publications ? help Back to Top | |||
---|---|---|---|
|