PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g102450.3 | ||||||||
Common Name | MTR_2g102450 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | B3 | ||||||||
Protein Properties | Length: 357aa MW: 40490 Da PI: 9.7438 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54.9 | 1.6e-17 | 88 | 177 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k +++s+v + +l lp +f+ eh + +++ t++lede+g +++ + rk++ l++GW++F+ +++L++gD vvF+l++ +f +v Medtr2g102450.3 88 FIKSMLRSHVYSCFWLGLPSRFCVEHL-P-KTDYTMVLEDEKGLEYDAVYLARKTG----LSGGWRGFALEHKLDDGDAVVFELVEAARF--KV 173 89************************5.3.3678****************656665....***********************9876666..77 PP EEE- CS B3 95 kvfr 98 ++r Medtr2g102450.3 174 YIVR 177 7766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.35E-23 | 81 | 177 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.0E-20 | 81 | 177 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.52E-25 | 86 | 177 | No hit | No description |
SMART | SM01019 | 7.0E-22 | 88 | 179 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.365 | 88 | 179 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.1E-16 | 88 | 177 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MAKGCSTTSN NYEAAREQRL VENKKRFEFG TDLPQLRRRA RSSSSWGSYA YAARPLDEIK 60 VATAQERKRA WDAAEALQIN LQSSNPIFIK SMLRSHVYSC FWLGLPSRFC VEHLPKTDYT 120 MVLEDEKGLE YDAVYLARKT GLSGGWRGFA LEHKLDDGDA VVFELVEAAR FKVYIVRAFE 180 NIDEEEEKEE SDALVEDGNM CTSKTIKKSE TVKPKEATKK TRMQKVSKVP THEPKSETVK 240 SEETSRTTRS SHKKQKISDV STAIEPKEDA HLETVKPEAA TKLPNKKRKA KEGDVSKKIL 300 LEDNAKAMKT DSERKEEPVE DVDVELKKVK LDDKASKPAA EKPRKIRAPK FFRKRG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 35 | 41 | LRRRARS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g102450.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC208096 | 0.0 | AC208096.4 Medicago truncatula chromosome 2 BAC clone mth2-36i8, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003597798.2 | 0.0 | B3 domain-containing protein Os05g0481400 | ||||
TrEMBL | A0A072VN61 | 0.0 | A0A072VN61_MEDTR; B3 DNA-binding domain protein | ||||
STRING | AES68049 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58280.1 | 4e-45 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g102450.3 |
Entrez Gene | 11431557 |
Publications ? help Back to Top | |||
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