PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g102450.2
Common NameMTR_2g102450
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 411aa    MW: 46487.9 Da    PI: 10.0863
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g102450.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.62e-17142231198
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f+k +++s+v +  +l lp +f+ eh  + +++ t++lede+g +++  +  rk++    l++GW++F+ +++L++gD vvF+l++  +f  +v
  Medtr2g102450.2 142 FIKSMLRSHVYSCFWLGLPSRFCVEHL-P-KTDYTMVLEDEKGLEYDAVYLARKTG----LSGGWRGFALEHKLDDGDAVVFELVEAARF--KV 227
                      89************************5.3.3678****************656665....***********************9876666..77 PP

                      EEE- CS
               B3  95 kvfr 98 
                       ++r
  Medtr2g102450.2 228 YIVR 231
                      7766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-23135231IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.8E-20135231IPR015300DNA-binding pseudobarrel domain
CDDcd100179.20E-25140231No hitNo description
PROSITE profilePS5086312.365142233IPR003340B3 DNA binding domain
PfamPF023626.5E-16142231IPR003340B3 DNA binding domain
SMARTSM010197.0E-22142233IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MAKGCSTTSN NYEAAREQRL VENKKRFEDL GISKISKTLT EIASPAKKST NRLFRPKSKT  60
NVVLEPRRSS RARNSVPSYA EEFGTDLPQL RRRARSSSSW GSYAYAARPL DEIKVATAQE  120
RKRAWDAAEA LQINLQSSNP IFIKSMLRSH VYSCFWLGLP SRFCVEHLPK TDYTMVLEDE  180
KGLEYDAVYL ARKTGLSGGW RGFALEHKLD DGDAVVFELV EAARFKVYIV RAFENIDEEE  240
EKEESDALVE DGNMCTSKTI KKSETVKPKE ATKKTRMQKV SKVPTHEPKS ETVKSEETSR  300
TTRSSHKKQK ISDVSTAIEP KEDAHLETVK PEAATKLPNK KRKAKEGDVS KKILLEDNAK  360
AMKTDSERKE EPVEDVDVEL KKVKLDDKAS KPAAEKPRKI RAPKFFRKRG *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18995LRRRARS
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g102450.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2080960.0AC208096.4 Medicago truncatula chromosome 2 BAC clone mth2-36i8, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597798.20.0B3 domain-containing protein Os05g0481400
TrEMBLG7IMD40.0G7IMD4_MEDTR; B3 DNA-binding domain protein
STRINGAES680490.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.13e-53B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]