PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g102450.2 | ||||||||
Common Name | MTR_2g102450 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | B3 | ||||||||
Protein Properties | Length: 411aa MW: 46487.9 Da PI: 10.0863 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54.6 | 2e-17 | 142 | 231 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k +++s+v + +l lp +f+ eh + +++ t++lede+g +++ + rk++ l++GW++F+ +++L++gD vvF+l++ +f +v Medtr2g102450.2 142 FIKSMLRSHVYSCFWLGLPSRFCVEHL-P-KTDYTMVLEDEKGLEYDAVYLARKTG----LSGGWRGFALEHKLDDGDAVVFELVEAARF--KV 227 89************************5.3.3678****************656665....***********************9876666..77 PP EEE- CS B3 95 kvfr 98 ++r Medtr2g102450.2 228 YIVR 231 7766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.14E-23 | 135 | 231 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.8E-20 | 135 | 231 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.20E-25 | 140 | 231 | No hit | No description |
PROSITE profile | PS50863 | 12.365 | 142 | 233 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.5E-16 | 142 | 231 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.0E-22 | 142 | 233 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence Send to blast |
MAKGCSTTSN NYEAAREQRL VENKKRFEDL GISKISKTLT EIASPAKKST NRLFRPKSKT 60 NVVLEPRRSS RARNSVPSYA EEFGTDLPQL RRRARSSSSW GSYAYAARPL DEIKVATAQE 120 RKRAWDAAEA LQINLQSSNP IFIKSMLRSH VYSCFWLGLP SRFCVEHLPK TDYTMVLEDE 180 KGLEYDAVYL ARKTGLSGGW RGFALEHKLD DGDAVVFELV EAARFKVYIV RAFENIDEEE 240 EKEESDALVE DGNMCTSKTI KKSETVKPKE ATKKTRMQKV SKVPTHEPKS ETVKSEETSR 300 TTRSSHKKQK ISDVSTAIEP KEDAHLETVK PEAATKLPNK KRKAKEGDVS KKILLEDNAK 360 AMKTDSERKE EPVEDVDVEL KKVKLDDKAS KPAAEKPRKI RAPKFFRKRG * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 89 | 95 | LRRRARS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g102450.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC208096 | 0.0 | AC208096.4 Medicago truncatula chromosome 2 BAC clone mth2-36i8, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003597798.2 | 0.0 | B3 domain-containing protein Os05g0481400 | ||||
TrEMBL | G7IMD4 | 0.0 | G7IMD4_MEDTR; B3 DNA-binding domain protein | ||||
STRING | AES68049 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58280.1 | 3e-53 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g102450.2 |
Entrez Gene | 11431557 |
Publications ? help Back to Top | |||
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