PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g100670.2 | ||||||||
Common Name | MTR_2g100670 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | HSF | ||||||||
Protein Properties | Length: 312aa MW: 35441.2 Da PI: 4.5549 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 100.9 | 1.2e-31 | 34 | 124 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 F++k+y++++d+++++++sws+++nsfvv+++ efa +Lp+yFkh+nf+SF+ QL++YgF+k+++e+ eF++++F k++k+ll+ Medtr2g100670.2 34 FVQKTYDMVDDSATDDIVSWSSTNNSFVVWNPPEFAYVLLPTYFKHNNFSSFIHQLDTYGFRKIDSER---------CEFANEEFIKDQKHLLK 118 9*****************************************************************99.........67*************** PP XXXXXX CS HSF_DNA-bind 96 kikrkk 101 +i +k Medtr2g100670.2 119 NIDCRK 124 **9776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.4E-35 | 24 | 118 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 7.75E-32 | 30 | 120 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.2E-52 | 30 | 123 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.2E-27 | 34 | 121 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.0E-17 | 34 | 57 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.0E-17 | 72 | 84 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.0E-17 | 85 | 97 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0061615 | Biological Process | glycolytic process through fructose-6-phosphate | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003872 | Molecular Function | 6-phosphofructokinase activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MPTTRDKRQP LSQMDAAQPS SSTATENEGG PAPFVQKTYD MVDDSATDDI VSWSSTNNSF 60 VVWNPPEFAY VLLPTYFKHN NFSSFIHQLD TYGFRKIDSE RCEFANEEFI KDQKHLLKNI 120 DCRKPIHSHS HPPGSAVDPE RAALEEEIEK LSQEKNSLES RLLNATVDVE STKFQLDVLE 180 QLLDSMEKRQ TSLSNFFEKA LQNPNLLDHV RRNIESMDVV AYNSLIANQS NFILEFENVF 240 HQEFSNKLRL ELSPSVSDMN FVSGSTHVSN EDEESLQKHL SEGELTEMQT RTERPGCSEN 300 EEAILPSSKS K* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 3e-18 | 15 | 120 | 19 | 126 | Heat shock factor protein 1 |
5d5v_B | 3e-18 | 15 | 120 | 19 | 126 | Heat shock factor protein 1 |
5d5v_D | 3e-18 | 15 | 120 | 19 | 126 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g100670.2 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC125390 | 0.0 | AC125390.32 Medicago truncatula clone mth2-17c11, complete sequence. | |||
GenBank | AC187466 | 0.0 | AC187466.2 Medicago truncatula chromosome 2 BAC clone mth2-69p21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024632611.1 | 0.0 | heat stress transcription factor A-5 isoform X2 | ||||
Refseq | XP_024632612.1 | 0.0 | heat stress transcription factor A-5 isoform X2 | ||||
Swissprot | Q94BZ5 | 5e-90 | HSFA5_ARATH; Heat stress transcription factor A-5 | ||||
TrEMBL | A0A072VD60 | 0.0 | A0A072VD60_MEDTR; Heat shock transcription factor A8 | ||||
TrEMBL | A0A396JJ32 | 0.0 | A0A396JJ32_MEDTR; Putative transcription factor HSF-type-DNA-binding family | ||||
STRING | AES67910 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13980.1 | 2e-92 | HSF family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g100670.2 |
Entrez Gene | 11441988 |
Publications ? help Back to Top | |||
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