PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g100670.2
Common NameMTR_2g100670
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HSF
Protein Properties Length: 312aa    MW: 35441.2 Da    PI: 4.5549
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g100670.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind100.91.2e-31341242101
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      F++k+y++++d+++++++sws+++nsfvv+++ efa  +Lp+yFkh+nf+SF+ QL++YgF+k+++e+          eF++++F k++k+ll+
  Medtr2g100670.2  34 FVQKTYDMVDDSATDDIVSWSSTNNSFVVWNPPEFAYVLLPTYFKHNNFSSFIHQLDTYGFRKIDSER---------CEFANEEFIKDQKHLLK 118
                      9*****************************************************************99.........67*************** PP

                      XXXXXX CS
     HSF_DNA-bind  96 kikrkk 101
                      +i  +k
  Medtr2g100670.2 119 NIDCRK 124
                      **9776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.4E-3524118IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.75E-3230120IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.2E-5230123IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-2734121IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-173457IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-177284IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-178597IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0061615Biological Processglycolytic process through fructose-6-phosphate
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003872Molecular Function6-phosphofructokinase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MPTTRDKRQP LSQMDAAQPS SSTATENEGG PAPFVQKTYD MVDDSATDDI VSWSSTNNSF  60
VVWNPPEFAY VLLPTYFKHN NFSSFIHQLD TYGFRKIDSE RCEFANEEFI KDQKHLLKNI  120
DCRKPIHSHS HPPGSAVDPE RAALEEEIEK LSQEKNSLES RLLNATVDVE STKFQLDVLE  180
QLLDSMEKRQ TSLSNFFEKA LQNPNLLDHV RRNIESMDVV AYNSLIANQS NFILEFENVF  240
HQEFSNKLRL ELSPSVSDMN FVSGSTHVSN EDEESLQKHL SEGELTEMQT RTERPGCSEN  300
EEAILPSSKS K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-181512019126Heat shock factor protein 1
5d5v_B3e-181512019126Heat shock factor protein 1
5d5v_D3e-181512019126Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g100670.2
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1253900.0AC125390.32 Medicago truncatula clone mth2-17c11, complete sequence.
GenBankAC1874660.0AC187466.2 Medicago truncatula chromosome 2 BAC clone mth2-69p21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024632611.10.0heat stress transcription factor A-5 isoform X2
RefseqXP_024632612.10.0heat stress transcription factor A-5 isoform X2
SwissprotQ94BZ55e-90HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLA0A072VD600.0A0A072VD60_MEDTR; Heat shock transcription factor A8
TrEMBLA0A396JJ320.0A0A396JJ32_MEDTR; Putative transcription factor HSF-type-DNA-binding family
STRINGAES679100.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.12e-92HSF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Reňák D,Gibalová A,Solcová K,Honys D
    A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein.
    Plant Cell Environ., 2014. 37(3): p. 670-83
    [PMID:23961845]