PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g100670.1
Common NameMTR_2g100670
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HSF
Protein Properties Length: 420aa    MW: 47285.6 Da    PI: 4.3937
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g100670.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind100.12e-311422322101
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      F++k+y++++d+++++++sws+++nsfvv+++ efa  +Lp+yFkh+nf+SF+ QL++YgF+k+++e+          eF++++F k++k+ll+
  Medtr2g100670.1 142 FVQKTYDMVDDSATDDIVSWSSTNNSFVVWNPPEFAYVLLPTYFKHNNFSSFIHQLDTYGFRKIDSER---------CEFANEEFIKDQKHLLK 226
                      9*****************************************************************99.........67*************** PP

                      XXXXXX CS
     HSF_DNA-bind  96 kikrkk 101
                      +i  +k
  Medtr2g100670.1 227 NIDCRK 232
                      **8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF537844.71E-1031106IPR000023Phosphofructokinase domain
Gene3DG3DSA:1.10.10.104.2E-35132226IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.2E-52138231IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.33E-31138228IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.1E-27142229IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-17142165IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-17180192IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-17193205IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0061615Biological Processglycolytic process through fructose-6-phosphate
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003872Molecular Function6-phosphofructokinase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MKWSISSSTE PDLPDFSNTA LLLLFQPLEL AGFIAMYATL VSRDVDCCLI PESPFYLEGP  60
GHMVIVIAEG AGQELIPSND TSIKNKPDAS SNDLFQDVDL WLSQKSKQMP TTRDKRQPLS  120
QMDAAQPSSS TATENEGGPA PFVQKTYDMV DDSATDDIVS WSSTNNSFVV WNPPEFAYVL  180
LPTYFKHNNF SSFIHQLDTY GFRKIDSERC EFANEEFIKD QKHLLKNIDC RKPIHSHSHP  240
PGSAVDPERA ALEEEIEKLS QEKNSLESRL LNATVDVEST KFQLDVLEQL LDSMEKRQTS  300
LSNFFEKALQ NPNLLDHVRR NIESMDVVAY NSLIANQSNF ILEFENVFHQ EFSNKLRLEL  360
SPSVSDMNFV SGSTHVSNED EESLQKHLSE GELTEMQTRT ERPGCSENEE AILPSSKSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-1812422820126Heat shock factor protein 1
5d5v_B8e-1812422820126Heat shock factor protein 1
5d5v_D8e-1812422820126Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g100670.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1253900.0AC125390.32 Medicago truncatula clone mth2-17c11, complete sequence.
GenBankAC1874660.0AC187466.2 Medicago truncatula chromosome 2 BAC clone mth2-69p21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024632611.10.0heat stress transcription factor A-5 isoform X2
RefseqXP_024632612.10.0heat stress transcription factor A-5 isoform X2
SwissprotQ94BZ55e-88HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLG7IHY10.0G7IHY1_MEDTR; Heat shock transcription factor A8
STRINGAES679100.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49613253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-90HSF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Reňák D,Gibalová A,Solcová K,Honys D
    A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein.
    Plant Cell Environ., 2014. 37(3): p. 670-83
    [PMID:23961845]