PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g100670.1 | ||||||||
Common Name | MTR_2g100670 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | HSF | ||||||||
Protein Properties | Length: 420aa MW: 47285.6 Da PI: 4.3937 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 100.1 | 2e-31 | 142 | 232 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 F++k+y++++d+++++++sws+++nsfvv+++ efa +Lp+yFkh+nf+SF+ QL++YgF+k+++e+ eF++++F k++k+ll+ Medtr2g100670.1 142 FVQKTYDMVDDSATDDIVSWSSTNNSFVVWNPPEFAYVLLPTYFKHNNFSSFIHQLDTYGFRKIDSER---------CEFANEEFIKDQKHLLK 226 9*****************************************************************99.........67*************** PP XXXXXX CS HSF_DNA-bind 96 kikrkk 101 +i +k Medtr2g100670.1 227 NIDCRK 232 **8776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF53784 | 4.71E-10 | 31 | 106 | IPR000023 | Phosphofructokinase domain |
Gene3D | G3DSA:1.10.10.10 | 4.2E-35 | 132 | 226 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.2E-52 | 138 | 231 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.33E-31 | 138 | 228 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.1E-27 | 142 | 229 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.2E-17 | 142 | 165 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.2E-17 | 180 | 192 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.2E-17 | 193 | 205 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0061615 | Biological Process | glycolytic process through fructose-6-phosphate | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003872 | Molecular Function | 6-phosphofructokinase activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MKWSISSSTE PDLPDFSNTA LLLLFQPLEL AGFIAMYATL VSRDVDCCLI PESPFYLEGP 60 GHMVIVIAEG AGQELIPSND TSIKNKPDAS SNDLFQDVDL WLSQKSKQMP TTRDKRQPLS 120 QMDAAQPSSS TATENEGGPA PFVQKTYDMV DDSATDDIVS WSSTNNSFVV WNPPEFAYVL 180 LPTYFKHNNF SSFIHQLDTY GFRKIDSERC EFANEEFIKD QKHLLKNIDC RKPIHSHSHP 240 PGSAVDPERA ALEEEIEKLS QEKNSLESRL LNATVDVEST KFQLDVLEQL LDSMEKRQTS 300 LSNFFEKALQ NPNLLDHVRR NIESMDVVAY NSLIANQSNF ILEFENVFHQ EFSNKLRLEL 360 SPSVSDMNFV SGSTHVSNED EESLQKHLSE GELTEMQTRT ERPGCSENEE AILPSSKSK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 8e-18 | 124 | 228 | 20 | 126 | Heat shock factor protein 1 |
5d5v_B | 8e-18 | 124 | 228 | 20 | 126 | Heat shock factor protein 1 |
5d5v_D | 8e-18 | 124 | 228 | 20 | 126 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g100670.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC125390 | 0.0 | AC125390.32 Medicago truncatula clone mth2-17c11, complete sequence. | |||
GenBank | AC187466 | 0.0 | AC187466.2 Medicago truncatula chromosome 2 BAC clone mth2-69p21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024632611.1 | 0.0 | heat stress transcription factor A-5 isoform X2 | ||||
Refseq | XP_024632612.1 | 0.0 | heat stress transcription factor A-5 isoform X2 | ||||
Swissprot | Q94BZ5 | 5e-88 | HSFA5_ARATH; Heat stress transcription factor A-5 | ||||
TrEMBL | G7IHY1 | 0.0 | G7IHY1_MEDTR; Heat shock transcription factor A8 | ||||
STRING | AES67910 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4961 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13980.1 | 1e-90 | HSF family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g100670.1 |
Entrez Gene | 11441988 |
Publications ? help Back to Top | |||
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