PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g100490.1
Common NameMTR_2g100490
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 393aa    MW: 44026.1 Da    PI: 5.1477
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g100490.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.93.6e-08305345954
                      HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       r+RR+ri +++  L++++P       +K++ a++L +A +Y+k L
  Medtr2g100490.1 305 ARQRRERISERIRVLQKIVPGG-----TKMDTASMLDEAANYLKFL 345
                      69******************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.256296345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-12298354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.07E-13300355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-13302351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-5305345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.62E-5318350No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MDCLSWDDDS QFVANIPILW NTQPQDFARD YSMCNPSSSV FNNQMQEMQK VESGAGNSWE  60
ETLIFQSYPS LSVNIHPPNN YVPLPDFNMA HQPISKSTTT CSLESSLDCL LSATTNSNTD  120
TNSVQDDGIS MIFSDCKNRN LWNFSAVSSA ESESTNARNK DMQYGFKELD QETVSPASSD  180
QGKIIDNSKV HSTKRTNIDQ YDPCFSITAQ NSSSSTEFGF KLISEKPPKS KKPRWDNKCP  240
GSSNINFQQP NSSFEEPDPE AIAQMKEMIY RAAAFRPVTN LGLEVMEKPK RKNVKISKDP  300
QTVAARQRRE RISERIRVLQ KIVPGGTKMD TASMLDEAAN YLKFLRAQVK ELENIGNKID  360
TVNNCPPTNI AFSFNPSISM QNPNVNIQYS HD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1305310RQRRER
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g100490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1874660.0AC187466.2 Medicago truncatula chromosome 2 BAC clone mth2-69p21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597642.10.0transcription factor bHLH87
SwissprotQ8S3D26e-84BH087_ARATH; Transcription factor bHLH87
TrEMBLG7IHW40.0G7IHW4_MEDTR; Basic helix loop helix (BHLH) DNA-binding family protein
STRINGAES678930.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45303257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.13e-67bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]