PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g099990.2
Common NameMTR_2g099990
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 400aa    MW: 44508.2 Da    PI: 7.4244
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g099990.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-05628123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     + C++C+k F r  nL+ H r H
  Medtr2g099990.2  6 FICEICNKGFQRDQNLQLHKRGH 28
                     89******************988 PP
2zf-C2H212.50.0004582104123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k +  +s+ k H +t+
  Medtr2g099990.2  82 WKCDKCSKKYAVQSDWKAHSKTC 104
                      58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.8E-6528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.44E-7528No hitNo description
PfamPF121712.5E-5628IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.022628IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.803628IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003551904777IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.8E-470103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.44E-777102No hitNo description
SMARTSM0035515082102IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MATNRFICEI CNKGFQRDQN LQLHKRGHNL PWKLKQRTSN EIRKKVYVCP EPTCVHHDPS  60
RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDWKAH SKTCGTREYR CDCGTLFSRR  120
DSFITHRAFC DALAEESSRT VIPQPTQPNS HHNMNNLQTQ DIQGFTLKKE HQSFNMLRPE  180
QEVQIPSWLC QSSIDLSSNY SSLDQDLHLY ENPNPRNGPT STLPSYQPSS AASPHMSATA  240
LLQKAAQMGA TSSCSSQSMM SGTHQQGHVS IVDSATNNMI NSNGNFSLNL SSCEDQMINN  300
SFSSSGFHGT SFEDTFAGNI LHSNQDHNIN HDGDNDIPKT TTNDDDVAAG GNNAFTRDFL  360
GLKPLSDSDI LTIAGMGSCM NPSNSNHQEN HSQKPWEGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-3578139364Zinc finger protein JACKDAW
5b3h_F3e-3578139364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13244KLKQRTSNEIRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.216380.0glandular trichome
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g099990.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1489180.0AC148918.3 Medicago truncatula chromosome 2 clone mth2-44o11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597597.20.0protein indeterminate-domain 11 isoform X1
SwissprotQ8H1F51e-103IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLG7IUH60.0G7IUH6_MEDTR; C2H2-type zinc finger protein
STRINGAES678480.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-87indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]