PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g099990.1
Common NameMTR_2g099990
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 469aa    MW: 51892.2 Da    PI: 7.452
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g099990.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.5e-057597123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     + C++C+k F r  nL+ H r H
  Medtr2g099990.1 75 FICEICNKGFQRDQNLQLHKRGH 97
                     89******************988 PP
2zf-C2H212.20.00054151173123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k +  +s+ k H +t+
  Medtr2g099990.1 151 WKCDKCSKKYAVQSDWKAHSKTC 173
                      58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.2E-67497No hitNo description
Gene3DG3DSA:3.30.160.607.0E-67497IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121713.0E-57597IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.8037597IPR007087Zinc finger, C2H2
SMARTSM003550.0227597IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
SMARTSM00355190116146IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.8E-4139172IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.2E-6146171No hitNo description
SMARTSM00355150151171IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MSNLTSASGE ASANSSGNRT HEVDAKFSQQ YFASSQTQTH DETPAKKRRN LPGNPDPQAE  60
VIALSPKTLM ATNRFICEIC NKGFQRDQNL QLHKRGHNLP WKLKQRTSNE IRKKVYVCPE  120
PTCVHHDPSR ALGDLTGIKK HFCRKHGEKK WKCDKCSKKY AVQSDWKAHS KTCGTREYRC  180
DCGTLFSRRD SFITHRAFCD ALAEESSRTV IPQPTQPNSH HNMNNLQTQD IQGFTLKKEH  240
QSFNMLRPEQ EVQIPSWLCQ SSIDLSSNYS SLDQDLHLYE NPNPRNGPTS TLPSYQPSSA  300
ASPHMSATAL LQKAAQMGAT SSCSSQSMMS GTHQQGHVSI VDSATNNMIN SNGNFSLNLS  360
SCEDQMINNS FSSSGFHGTS FEDTFAGNIL HSNQDHNINH DGDNDIPKTT TNDDDVAAGG  420
NNAFTRDFLG LKPLSDSDIL TIAGMGSCMN PSNSNHQENH SQKPWEGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-35147208364Zinc finger protein JACKDAW
5b3h_F4e-35147208364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101113KLKQRTSNEIRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.216380.0glandular trichome
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g099990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1489180.0AC148918.3 Medicago truncatula chromosome 2 clone mth2-44o11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597597.20.0protein indeterminate-domain 11 isoform X1
SwissprotQ8H1F51e-126IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLG7IUH60.0G7IUH6_MEDTR; C2H2-type zinc finger protein
STRINGAES678480.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-103indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]