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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g099350.1 | ||||||||
Common Name | MTR_2g099350 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | Nin-like | ||||||||
Protein Properties | Length: 965aa MW: 106553 Da PI: 5.2997 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 90.8 | 1.1e-28 | 604 | 654 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk++gvc+T+LKriCR++GI+RWP+Rki+++ Medtr2g099350.1 604 EKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRHHGISRWPSRKINKV 654 89***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.824 | 586 | 674 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 8.4E-26 | 606 | 654 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 3.64E-22 | 855 | 948 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 1.1E-22 | 861 | 943 | No hit | No description |
PROSITE profile | PS51745 | 20.499 | 864 | 946 | IPR000270 | PB1 domain |
SMART | SM00666 | 1.0E-21 | 864 | 946 | IPR000270 | PB1 domain |
Pfam | PF00564 | 5.1E-16 | 866 | 944 | IPR000270 | PB1 domain |
CDD | cd06407 | 2.33E-31 | 867 | 945 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 965 aa Download sequence Send to blast |
MEYPYYSKGG GIGYWQSPGT QFEGPTSLDG GINNLVSEDM PNSFSELMNF DTYAGLCSGP 60 STTDQIMTNE LPSLASALYQ LPDGFNPVEP NSGQFYGGNY NNFESSPIFG EKIVCQQMDT 120 LLGFLDNSND ANNSSSRQKF DDPSQHVNAF DMGNYVIARP QALISRPPAL SLDERMLKAL 180 SFFKESAGGG ILAQVWVPIK HDGQVLLSTS EQPYLLDQML AGYREVSRTF RFSTEGKPGC 240 IPGLPGRVFI SKVPEWTSNV GYYNPKEYLR AEHARNHEVR GSIAFPIFDL HSGLPCSAVL 300 ELVTTKEKLD FDRELEIICR SLQLVNLRTT ASSRLLPECL STNKRAALTE IVDVLRSVCY 360 AHRLPLALTW IPCFYTDGTR DETTRIQIKE GNSSSREKNI LCIEESACYI TDRVMEGFVH 420 ACIEHPLEEG NGVAGKALQS NHPFFYSDVK TYDISEYPLV HHARKFNLGA AVAIRLRSIY 480 TNNDDYILEF FLPINMKGSS EQQLLLDNLS GTMQKICKSL RTVSGAEISG MESSVVGFGK 540 KNVPSFPSTS TRNSQVSLIN EKDGSVQKLS LDTSNLRNNG NKPSCNQENN GSRRRVEKKR 600 NTSEKNVSLS VLQQYFSGSL KDAAKSIGVC PTTLKRICRH HGISRWPSRK INKVNRSLKK 660 IQTVLDSVQG VEGGLKFDPS SGAFVAGGTT TEEINENKSL LFPERSTTQD SEPMSQNAVS 720 VPSEDENLEN KWEGKLKETN TCSIDCSEDS KSFAMDDCPE QAYIGSVLAK CDEWVLNNGG 780 LREEKRKHST IGQRTSSFAV DEMDTGADGD DDDVVEHNHP TSSSLTDSSN GSGSMIHGSS 840 SGYQNFKNQK PSKGKSTIVD SGSKIVVKAT YGEDTIRFKF DPSTGYYKLY EEVAARFKLQ 900 DGSFQLKYLD DEEEWVMLVN DSDLQVCLEI LNDMGTHNAR FLVRDIPCTF GSSGSSSCYL 960 GGSS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g099350.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC146308 | 0.0 | AC146308.2 Medicago truncatula clone mth2-10a12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003597538.2 | 0.0 | protein NLP9 | ||||
Refseq | XP_024632583.1 | 0.0 | protein NLP9 | ||||
TrEMBL | G7IS09 | 0.0 | G7IS09_MEDTR; Plant regulator RWP-RK family protein | ||||
STRING | AES67789 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3464 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43500.2 | 0.0 | Nin-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g099350.1 |
Entrez Gene | 11423270 |
Publications ? help Back to Top | |||
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