PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g098310.1
Common NameMTR_2g098310
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 413aa    MW: 46263.9 Da    PI: 6.1944
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g098310.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.2e-12344389655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR +i +++ +L++l+P+     +k  + a++L +Av+YIk+Lq
  Medtr2g098310.1 344 SIAERVRRTKISERMRKLQDLVPNM----DKQTNTADMLDLAVDYIKDLQ 389
                      689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.288338388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-16341402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.46E-12342393No hitNo description
Gene3DG3DSA:4.10.280.104.5E-16343400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9344389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-13344394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0042335Biological Processcuticle development
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MESDLHQQQQ PQVNSSGLTR FKSAPSSYFN NIIDREFYEH VFNKPSSPET ERVFSRFINS  60
FGSDDDLLAQ KISVDSTVKE EEEVNINQQQ QQQDQGLASI NNEHVVHQQS NYNNSVPSSH  120
GFYQSSMMPP LPNQNVSSGL DGSFSMGVNR LQQVKNHGGN NSNLIRHSSS PAGLFSQINI  180
ENGYVSMRGM GTLGAVNNSM KEAKFSTARS LKNQSNYSSG LMSTIDEVGD KDNRENNLEN  240
EAFGESHGNE YMDYPVDTWD DSEMMSENVG GLKRFRDNDS KQQFSGLNVQ NETGGGHSNS  300
PLAHQLSMPN TSSEMAAMEK FLHFSDSVPM KIRAKRGCAT HPRSIAERVR RTKISERMRK  360
LQDLVPNMDK QTNTADMLDL AVDYIKDLQK QAQKLQDCQA KCTCPHKQQQ QQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.62860.0leaf| root| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00195DAPTransfer from AT1G51140Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g098310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2331770.0AC233177.2 Medicago truncatula strain A17 clone mth2-54k10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597460.10.0transcription factor bHLH130
TrEMBLG7IUE70.0G7IUE7_MEDTR; Transcription factor bHLH122-like protein
STRINGAES677110.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.11e-62bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]