PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g097390.1
Common NameMTR_2g097390
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 644aa    MW: 73552.5 Da    PI: 4.972
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g097390.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS336.35.6e-1032726401373
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lL+ cA+ +s +d ++a++lL+++++++sp+gd +qRla++f +AL+arla+++s++y+al+++++s    ++ ++a++++s ++P+ k++
  Medtr2g097390.1 272 LRTLLMLCAQSISCNDISNANQLLNQIKKHSSPTGDGTQRLAHFFGNALEARLAGTGSHVYRALSSKKKS---AADMVKAYQVYSSACPFEKLA 362
                      5789************************************************************999998...99******************* PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                       +  N aIl+ +++ e +HiiDf++++G++W+ ++  L++R++gpp+lRiTg++ p+  s e+++etg rL++++++++vpfe+n  +ak++e+
  Medtr2g097390.1 363 IMFSNDAILNVAKETESLHIIDFGVGYGFKWLGFIYRLSKRSGGPPKLRITGIDLPN--SLERVNETGLRLSSYCKRFNVPFEYNG-IAKNWES 453
                      *******************************************************87..9**************************.7****** PP

             GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpresee 281
                      +++++++++++E +aV +v++ ++l+de+v +e++r +vL+l+k+ +P++++++  +  ++++ F++rf ea+ yysalfd+l  +++ re+  
  Medtr2g097390.1 454 IKVQDFKIRKNEFVAVTCVFKFENLPDETVVSENPRGAVLDLIKKANPNIFIHSIVNGGYDAPFFVTRFKEAVFYYSALFDMLdYNNVEREDPF 547
                      ***********************************************************************************77899999*** PP

             GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                      r + E ++ g++i+nv+aceg +r+er et+++W++r +  GF++++l++++ ++ k+ lr  + +  +  e +++++++gWk+r L+  S+W
  Medtr2g097390.1 548 RLMFEVVFWGNDIMNVIACEGCDRVERPETYMHWHSRHMGNGFRSLKLDKQIINKLKCKLRDDAyNSDFLFEVNENWMLQGWKGRILFGSSCW 640
                      *************************************************************9887888************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.126246620IPR005202Transcription factor GRAS
PfamPF035141.9E-100272640IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MDKGVVDPLH EQSKSEFTST VLGFINKFLM EDDDSEEDYN MFQHHEHEVS STVLGSINQF  60
LMEEDFEKEY TQFQDSFALQ LTEKSFHDVI AHTPLPPPPP PTAVTAITTT LPSSIQHEYQ  120
QNYNFVDSPN FSDYSLSSDS TSSFELDPII DSYNYNYNPF LLPNTPPFSP NNFVSQSNST  180
IFPSFNNALS HEVLQTENFE EEHFLNVSQN GSEQVYVDDS GELSELFDKV LVLGTKFTKG  240
PLQNTSFQQN EELSNRFYGS RRQRSYEEVV DLRTLLMLCA QSISCNDISN ANQLLNQIKK  300
HSSPTGDGTQ RLAHFFGNAL EARLAGTGSH VYRALSSKKK SAADMVKAYQ VYSSACPFEK  360
LAIMFSNDAI LNVAKETESL HIIDFGVGYG FKWLGFIYRL SKRSGGPPKL RITGIDLPNS  420
LERVNETGLR LSSYCKRFNV PFEYNGIAKN WESIKVQDFK IRKNEFVAVT CVFKFENLPD  480
ETVVSENPRG AVLDLIKKAN PNIFIHSIVN GGYDAPFFVT RFKEAVFYYS ALFDMLDYNN  540
VEREDPFRLM FEVVFWGNDI MNVIACEGCD RVERPETYMH WHSRHMGNGF RSLKLDKQII  600
NKLKCKLRDD AYNSDFLFEV NENWMLQGWK GRILFGSSCW IPT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-462616428380Protein SCARECROW
5b3h_A2e-462616427379Protein SCARECROW
5b3h_D2e-462616427379Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g097390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597371.20.0scarecrow-like protein 33
SwissprotQ9XE581e-163SCL14_ARATH; Scarecrow-like protein 14
TrEMBLG7IRU90.0G7IRU9_MEDTR; GRAS family transcription factor
STRINGAES676220.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-166SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]