PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g097290.1
Common NameMTR_2g097290
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 728aa    MW: 80837.2 Da    PI: 8.9928
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g097290.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-07626675147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Medtr2g097290.1 626 RRPFSVAEVEALVEAVERLGTGRWRDVKLHAFddaKHRTYVDLKDKWKTL 675
                      6789999***********************999**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.92E-8425514IPR029071Ubiquitin-related domain
Gene3DG3DSA:3.10.20.907.9E-5428501No hitNo description
PROSITE profilePS500539.417430500IPR000626Ubiquitin domain
PROSITE profilePS5129414.843621680IPR017930Myb domain
SMARTSM007172.5E-7625678IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-10626676IPR009057Homeodomain-like
SuperFamilySSF466892.55E-15627708IPR009057Homeodomain-like
CDDcd116608.26E-18627677No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MVAQKRIDYG FVGYQVPTKP RATRSPRKRD TFQRSVEHNQ MCAIDLLATV AAGTLLQEKQ  60
NPITPGDGSS KKDQHGFVKE EGQDTNKPFK AELPNEASCD RRLQHGFVKE GCPDANKSLK  120
AELSDDVSSD RKCFSAFSSQ VYGQNHCSKE NPHLEIDGHS CMASIVTSYS CSERLVADVL  180
VDRKSHSEMK NITSKVELGS SGYPDCSDCN LDVDVSKVKD ELQKSEKVPI GTATGACCVE  240
ELMDEKPQAP IGLGGNAKLS GYNDSVPSSS LFKGCKNVTV VSRDDDENFS GCAHPSSKTK  300
SFRSKTCIGD QRIRKRLASK YRKVARESKH ETLSNNAVDK NFNRVYNSQK NYHKRQISQM  360
NIPFKKRKIF DCNSTSNSNG NIRSGCTYYL PNNDTNQGVS CSSSRMRKDP GKSSLEAYRH  420
SAVRSRDSHV KLRIKSFRVP ELFIEISETA TVASLKKAVM EAVTTLLQGG LRVGMILHGK  480
KLRDDSKTLL QTGVSHDNQL DALGFTLEPN SSQSLPLTCA KDSLHVPTAD NMPLSLIGHT  540
SSPSVIYPTP MIHGFSDAEH QVTSLGNIVE SDHDSAPSSI NTLGEKRLIG STELVTIPEM  600
DTEGLAMLPV NQKPKRTEIS QRRRIRRPFS VAEVEALVEA VERLGTGRWR DVKLHAFDDA  660
KHRTYVDLKD KWKTLVHTAR ISPQQRRGEP VPQELLDRVL TAHAYWSQQQ QTKQQQLKHH  720
PETCLLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-556097101101Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1620626QRRRIRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.247170.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:15364931}.
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g097290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597364.20.0telomere repeat-binding protein 5 isoform X1
RefseqXP_024632533.10.0telomere repeat-binding protein 5 isoform X1
RefseqXP_024632534.10.0telomere repeat-binding protein 5 isoform X1
SwissprotQ6R0E31e-119TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLG7IHQ20.0G7IHQ2_MEDTR; Double-strand telomere-binding protein, putative
STRINGAES676150.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13562844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-105TRF-like 2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]