PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g093060.2 | ||||||||
Common Name | MTR_2g093060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | AP2 | ||||||||
Protein Properties | Length: 454aa MW: 50102 Da PI: 8.5351 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.4 | 3.2e-17 | 133 | 182 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Medtr2g093060.2 133 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 182 78*******************......55************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.85E-16 | 133 | 190 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.0E-9 | 133 | 182 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.0E-17 | 134 | 190 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.82 | 134 | 190 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-31 | 134 | 196 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.74E-11 | 134 | 189 | No hit | No description |
SuperFamily | SSF54171 | 1.96E-6 | 225 | 269 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.43E-14 | 225 | 270 | No hit | No description |
SMART | SM00380 | 2.9E-13 | 226 | 274 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 454 aa Download sequence Send to blast |
MLDLNLNEDY EDSIMLVEKL PEASSGTSNS SIVNAEASSN ITGDEDSCST RAGGVFTFNF 60 GILKVEGGND DVVVPTKEFF PVSAGTSTMM IPARKSAMDL TMDRRLGGEN GVVEVQQKPQ 120 AKKSRRGPRS RSSQYRGVTF YRRTGRWESH IWDCGKQVYL GGFDTAHAAA RAYDRAAIKF 180 RGLDADINFN LVEYEEDMNQ MKNLSKEEFV HILRRHSNGF SRGSSKYRGV TLHKCGRWEA 240 RMGQLLGKKA YDKAALKCNG REAVTNFEPS TYENEMKPGA INEGGSHNLD LNLGMATPGH 300 EPKENKGYCQ FQTVPSYNMH PGRNLKMETN VNSVIGDPSL KKLVVTEQRP PMWNATFSSF 360 FPNQQERAER IGIDPSKGHP NWGWQGHNQG TVSPVPQFSS AASSGFSISA TFPPNAIFQT 420 QPINSIPQSL CFTPGSNASS QYYYQVKSSQ APP* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.2666 | 0.0 | glandular trichome| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g093060.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT141402 | 0.0 | BT141402.1 Medicago truncatula clone JCVI-FLMt-20N11 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013465269.1 | 0.0 | ethylene-responsive transcription factor RAP2-7 isoform X3 | ||||
Swissprot | Q9SK03 | 1e-107 | RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7 | ||||
TrEMBL | A0A072VBB0 | 0.0 | A0A072VBB0_MEDTR; AP2-like ethylene-responsive transcription factor | ||||
STRING | AES67388 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.1 | 1e-106 | related to AP2.7 |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g093060.2 |
Entrez Gene | 11417561 |
Publications ? help Back to Top | |||
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