PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g093060.2
Common NameMTR_2g093060
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family AP2
Protein Properties Length: 454aa    MW: 50102 Da    PI: 8.5351
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g093060.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.2e-17133182155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Medtr2g093060.2 133 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 182
                      78*******************......55************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-16133190IPR016177DNA-binding domain
PfamPF008472.0E-9133182IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-17134190IPR001471AP2/ERF domain
PROSITE profilePS5103217.82134190IPR001471AP2/ERF domain
SMARTSM003803.0E-31134196IPR001471AP2/ERF domain
CDDcd000182.74E-11134189No hitNo description
SuperFamilySSF541711.96E-6225269IPR016177DNA-binding domain
CDDcd000186.43E-14225270No hitNo description
SMARTSM003802.9E-13226274IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MLDLNLNEDY EDSIMLVEKL PEASSGTSNS SIVNAEASSN ITGDEDSCST RAGGVFTFNF  60
GILKVEGGND DVVVPTKEFF PVSAGTSTMM IPARKSAMDL TMDRRLGGEN GVVEVQQKPQ  120
AKKSRRGPRS RSSQYRGVTF YRRTGRWESH IWDCGKQVYL GGFDTAHAAA RAYDRAAIKF  180
RGLDADINFN LVEYEEDMNQ MKNLSKEEFV HILRRHSNGF SRGSSKYRGV TLHKCGRWEA  240
RMGQLLGKKA YDKAALKCNG REAVTNFEPS TYENEMKPGA INEGGSHNLD LNLGMATPGH  300
EPKENKGYCQ FQTVPSYNMH PGRNLKMETN VNSVIGDPSL KKLVVTEQRP PMWNATFSSF  360
FPNQQERAER IGIDPSKGHP NWGWQGHNQG TVSPVPQFSS AASSGFSISA TFPPNAIFQT  420
QPINSIPQSL CFTPGSNASS QYYYQVKSSQ APP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.26660.0glandular trichome| root| stem
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g093060.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1414020.0BT141402.1 Medicago truncatula clone JCVI-FLMt-20N11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465269.10.0ethylene-responsive transcription factor RAP2-7 isoform X3
SwissprotQ9SK031e-107RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A072VBB00.0A0A072VBB0_MEDTR; AP2-like ethylene-responsive transcription factor
STRINGAES673880.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.11e-106related to AP2.7
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]