PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g090900.1
Common NameMTR_006s0023, MTR_2g090900
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bZIP
Protein Properties Length: 345aa    MW: 39081.1 Da    PI: 5.186
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g090900.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.24.6e-10193236548
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                      kr +r   NR +A+rsR RK+++i eLe+ v +L++e + L  +
  Medtr2g090900.1 193 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQTEVSVLSPR 236
                      899********************************998777655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.0E-13189253IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.588191243IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.5E-11193244No hitNo description
PfamPF001703.1E-9193236IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.33E-11193247No hitNo description
CDDcd147032.28E-22194244No hitNo description
PROSITE patternPS000360196211IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MAQLPPKIPN MSPSWPDFST QQKNIMPTSI STNNIVTTNN YQNQNPSWVD EFLDFSSARR  60
GAHRRSVSDS VTFLETPMLD GKHDGNNNDN EFDKFDDEQF LSMFSDEISG VNNMPPTLSS  120
SNPSSPSDQN FVNNDNEKEK KENDLGEMKK EEDEKQLKYE PDEVESQCKQ ENSQPQSNNN  180
NVTSSNDRIT DPKRVKRILA NRQSAQRSRV RKLQYISELE RSVTSLQTEV SVLSPRVAFL  240
DHQRLLLNVD NSALKQRIAA LAQDKLFKDA HQEALKREIE RLRQVYHHQN LKKMENANGS  300
PLPSPSQKPI CDSQTENEQL LNGNTCASVA SKERVEETVV SALT*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator. {ECO:0000269|PubMed:17719007}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g090900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1442740.0BT144274.1 Medicago truncatula clone JCVI-FLMt-16B21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465188.10.0basic leucine zipper 34
SwissprotQ9M2K41e-120BZP61_ARATH; Basic leucine zipper 61
TrEMBLG7ZUL80.0G7ZUL8_MEDTR; BZIP family transcription factor
STRINGAES829060.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20113488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42380.21e-97bZIP family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]